BAC Information

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BAC

Clone NameMSMg01-186F24
Chromosome6 (Build37)
Map Location 16,353,854 - 16,354,142
singlet/doubletsinglet
Overlap genenone
Upstream geneFoxp2, Mdfic, LOC100041116
Downstream geneTcfec, EG435881, Tes, EG232599, Cav2, Cav1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-186F24.T7 (MSMg01no186_f24.b1)MSMg01-186F24.TJ (MSMg01no186_f24.g1)
ACCAG378079AG378080
length750773
length of high quality
(start - end)		322 (46 - 367)290 (78 - 367)
definitionCHROMAT_FILE: MSMg01no186_f24.b1 PHD_FILE: MSMg01no186_f24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:20 2005CHROMAT_FILE: MSMg01no186_f24.g1 PHD_FILE: MSMg01no186_f24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATCAGTGAC
CCTAAAAATTCCACCAGAGAACTCCTAAAACTGATAAACAGCTTCAGTGA
AGTAGCAGGATGTAAAATTAACTCAAACAAGTCAATGGCCTTTCTCTACA
CAAAGAATAAACAGGCTGAGAAAAAAATTAGGGAAACAACACCCTTCTCA
ATAGTCACAAATAATATAAAATATCTTGGAGTGATTCTAACTAAGGAAGT
GAAAGATCCGTATGATAAAAACTTCAAGTCCCTGAAGAAAGAAATTAAAG
AAGATCTCAGAAGATGTTTTTGATCTCCCACGCTTATGGATTGGAAGGAT
CAACATTGTAAAAATGGCCACCCCGCCAAAAGCAATCAACAGATTCAATG
CAATCCCCATCAAAATTCCAACTCAATTCTTCAAGGAATTAGAAAGGGCA
ATCTGCAAATTCATCTGGAACAACAAAAAACCTAGGATAGCAAAAATTCT
TCTCAAGGATAAAAGAACCTCTGGTGGAATCACCATGCCTGACCTAAAGC
TGTACTACAGAACAATTGTGATAAAAACTGCATGGTACATGTATAACGAC
AGACAAGTAGACCAATGGAACAGAATTGAAGACCCTGAGATGAACCCCCT
CACCTATGGCCACTTGGTCTTTGACAAGGGAGAAAAAACCACGATTGGGA


CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTATATTTCCTTTTTATTTAGAT
TTTAATTTATTGCTAGCACTAACATATACCATAGAAAAATAGCTTTGGAG
GGTAAGAGGTAATGAAAAGTCACTTTTCCAAATACCTCCTTCCCATCTAA
ATTTTCTCACATTTGAATACATGTAGGAGAAACAAATTTTAAAATCTTGC
TAATTTAGAATTGAACTAAGAGAAATATGTTTTAATGAGGGGTTATAATC
AATTAAAAGTATCTGAGTCCATTGCAAGGGTTTACCCATTAAGAGCATTT
TACCTTTCTCACATGGTATGTTTCTCATGCCCCCCCAATCACGACACTAT
TAATGATACTCTGCTATACCCCCACACAGGAAACAAGCGTTACTGTCTCC
CGAGAGGCTTCATCCAACAGCAGATGGGAACAGAGACCGACAGCCAAACA
TCAGGGGGATCTTGGGGAGTCATATAGAAGACCGTGACACCTTTTCGTCC
CCCCCTTATCCCTTTTCTACCAACCTTATACCCCACTTTAAAAAAGCTAG
CTTATTTTCCCCTGTCCCCATTTGTGAACACACTTCTTATCTCTTTTGTG
CCCCCCATATAACCCCCCCCTATACATCTCCTTTTCCTTTTTTTTCCTGG
CGCAATATTTATCTCCCCCTTTTTACCCCTATTCCCCCTCCCCCTTTTTA
TCCCCTTTTCCTACCCTCCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no186_f24.g1 MSMg01no186_f24.g1 CHROMAT_FILE:
MSMg01no186_f24.g1 PHD_FILE: MSMg01no186_f24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:20 2005
         (290 letters)



>mm_chr6_16353654_16354343
          Length = 690

 Score =  551 bits (285), Expect = e-161
 Identities = 288/289 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttatatttcctttttatttagattttaatttattgctagcactaacatataccatagaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 489 ttatatttcctttttatttagattttaatttattgctagcactaacatataacatagaaa 430

                                                                       
Query: 61  aatagctttggagggtaagaggtaatgaaaagtcacttttccaaatacctccttcccatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 aatagctttggagggtaagaggtaatgaaaagtcacttttccaaatacctccttcccatc 370

                                                                       
Query: 121 taaattttctcacatttgaatacatgtaggagaaacaaattttaaaatcttgctaattta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 taaattttctcacatttgaatacatgtaggagaaacaaattttaaaatcttgctaattta 310

                                                                       
Query: 181 gaattgaactaagagaaatatgttttaatgaggggttataatcaattaaaagtatctgag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gaattgaactaagagaaatatgttttaatgaggggttataatcaattaaaagtatctgag 250

                                                            
Query: 241 tccattgcaagggtttacccattaagagcattttacctttctcacatgg 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tccattgcaagggtttacccattaagagcattttacctttctcacatgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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