BAC Information

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BAC

Clone NameMSMg01-188G07
Chromosome6 (Build37)
Map Location 105,467,138 - 105,467,449
singlet/doubletsinglet
Overlap genenone
Upstream geneCntn6, LOC384470
Downstream geneLOC100043716, LOC100043350, Cntn4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-188G07.T7 (MSMg01no188_g07.b1)MSMg01-188G07.TJ (MSMg01no188_g07.g1)
ACCAG379425AG379426
length760834
length of high quality
(start - end)
315 (56 - 370)41 (133 - 173)
definitionCHROMAT_FILE: MSMg01no188_g07.b1 PHD_FILE: MSMg01no188_g07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:02 2005CHROMAT_FILE: MSMg01no188_g07.g1 PHD_FILE: MSMg01no188_g07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCCAATCTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCCATTAGCAAAAAAGCATAACAATGAAAGTAAATTT
TCTGTGTTAGCTTCTCTTCTCTCATTGGCATATGCTAATTATACAGTCAT
GAGTTCCATTAGGACATTTCTATACTTGCATGTCATAATATACCTTGAAA
ACAGTAGGCCGTGCCACCAGAGAGAAAACCTGGTAGGGATGAGCAGATTC
AGGAACTCCAACAATTCTTAAAATTGAGAACAGTACACATTTACATATAC
TGCTGACCAGGTCCATTTCCTGGAACATGTTACCATGATACCCCACTTGG
AGGACTGTGACAATTAATCATATATTTACACCCGCCCCCCTTCCACATGT
AGATGAGGCATCCCTAATATTTCACACCAAGCCACTAAAAAGCATCTGCC
TCTAGACCCCACCCACCCCCAAATGTTTTTAAGGTCCTATCCACAAAGAA
GAAAGTGCACAATAATTTCACCAAAGACTGCCAGACTTATTGAGCTGTAA
CACTCCAAGATCGTGTTTTCACTCCCTAAGCTTTTGCCCGGACCTTGTCC
TGGTCCATCCAGCCAGGAGTGGTAGGCTGACTGCAGTCACTTCAGCCTTG
TGCGTCCCATCCCCTGCCCCCTAACTGTCTGCACCAGCTTTGCTCTAGCT
TCCCCCCTGGAGAGCTGTAATTCTTTTGCCCGTTCTGACCACCCCGAACC
CTGTTAGACC
TCCCCCCCCTCTNTCTCTTTTTTTCTTCCCTCTAACCTTCCNNNTCTTCT
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTGCAAATAGGTCCAAATTTTGAGAT
TTGTAAATATAGTTCAAAGAGGGAGATGGAGCACATTGTACTATCGAACA
AAAATGATGTTATCAAAAGTTACTATCAAATAATTTTGAAAAATTATGAT
TTAAATTGCCTTCACATTTTATCTAAAAGGTGAACCCGGTTAGTATCTAC
CAGGATTCTTGCCCTGACAGACAATTGTATTTGTTTTTGGCTACCTGCAG
AAATAACCCAATGGTACCCTGTTTATTTTCCCTTTCAGAATTGTTGAAGG
AACCCCATTGTTTTTTTTTTCCCCCCCCCCCCCACAAATAAGACTATTAC
GGGACAAATATTGGCCGGGTCCAGCTGTAAAATATCATCCCTTTGGTGGC
ATTACTGTATACCTTGCGATTTGACCTCACCTACACCCACCTTATCATCC
TTCTGTCTTATCTCCTCCATTCCCACCTTTACCATCACTCGTTCCTTGAT
CTGCATTACTCCTGACTTTCTAAAAAAAATTGCCCTATAGTCAATGTGCG
CGTTTCGAATTTGTCACCCCTCTCCCTCCTCTCCCGCTCTCTCCCACCAC
CTTTTACCCCCCCATTTCCTCTCTCCATATTTTTCCCTACACCCATCTTT
GCCCACCTCGTCTCCCTCCGTTTTTATTATCTTTTCCTATCCTCCCCTTA
CACATATACTTAACTCTTTCACCTCTCTCTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no188_g07.b1 MSMg01no188_g07.b1 CHROMAT_FILE:
MSMg01no188_g07.b1 PHD_FILE: MSMg01no188_g07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:04:02 2005
         (315 letters)



>mm_chr6_105466935_105467649
          Length = 715

 Score =  580 bits (300), Expect = e-170
 Identities = 309/312 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccattagcaaaaaagcataacaatgaaagtaaattttctgtgttagcttctctt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccattagcaaaaaagcataacaatgaaagtaaattttctgtgttagcttctctt 263

                                                                       
Query: 64  ctctcattggcatatgctaattatacagtcatgagttccattaggacatttctatacttg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctctcattggcatatgctaattatacagtcatgagttccattaggacatttctatacttg 323

                                                                       
Query: 124 catgtcataatataccttgaaaacagtaggccgtgccaccagagagaaaacctggtaggg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 catgtcataatataccttgaaaacagtaggccgtgccaccagagagaaaacctggtaggg 383

                                                                       
Query: 184 atgagcagattcaggaactccaacaattcttaaaattgagaacagtacacatttacatat 243
           |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 384 atgagcagattccggaactccaacaattctcaaaattgagaacagtacacatttacatat 443

                                                                       
Query: 244 actgctgaccaggtccatttcctggaacatgttaccatgataccccacttggaggactgt 303
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 444 actgctgaccaggtccatttcctggaacatgttaccatgatagcccacttggaggactgt 503

                       
Query: 304 gacaattaatca 315
           ||||||||||||
Sbjct: 504 gacaattaatca 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)