Query= MSMg01no188_h03.b1 MSMg01no188_h03.b1 CHROMAT_FILE:
MSMg01no188_h03.b1 PHD_FILE: MSMg01no188_h03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:04:06 2005
(317 letters)
>mm_chr6_63288421_63289137
Length = 717
Score = 543 bits (281), Expect = e-159
Identities = 302/309 (97%), Gaps = 1/309 (0%)
Strand = Plus / Minus
Query: 9 tcattacctaaatttatacttttacaaaattgaccacttaaaaggatagtgcaaatgaat 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tcattacctaaatttatacttttacaaaattgaccacttaaaaggatagtgcaaatgaat 367
Query: 69 gttgagagatactttgtgtgtgtccctacaacatgatcagcaaggactagcattacattt 128
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 366 gttgagagatactttgtgtgtgtccctacagcatgatcagcaaggactagcattacattt 307
Query: 129 agatgtaccctcacattgtatattttctttgtactcttcctatgtggatgcacttgtaca 188
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 306 agatgtaccctcacattgtatattttctttgtactcttcctatgtggacgcacttgtaca 247
Query: 189 ttttcacaagtgttggcaagtgattcgtaatggataatgggaatcttcctcactcatttt 248
||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||
Sbjct: 246 ttttcacaagtgttggcaagtgatttgtaatggataatggggatcttccttactcatttt 187
Query: 249 ccaccgtgtttctgagacagattctttcactgatactgaaggtggccactctcttggtag 308
||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ccaccatgtttctgag-cagattctttcactgatactgaaggtggccactctcttggtag 128
Query: 309 tctggccta 317
|||||||||
Sbjct: 127 tctggccta 119
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space: 218064
Effective search space used: 218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no188_h03.g1 MSMg01no188_h03.g1 CHROMAT_FILE:
MSMg01no188_h03.g1 PHD_FILE: MSMg01no188_h03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:04:06 2005
(291 letters)
>mm_chr6_63202119_63202809
Length = 691
Score = 536 bits (277), Expect = e-157
Identities = 286/289 (98%)
Strand = Plus / Plus
Query: 1 cgtgttgaatgacagaaagaagctgactttaccaatgtagacgctggggttctttgatgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cgtgttgaatgacagaaagaagctgactttaccaatgtagacgctggggttctttgatgt 260
Query: 61 ctgtcccctgaaaatcaaagcacgaccttctacacacattcccatggtcttgctttcctt 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 ctgtcccctgaaaatcaaagcacgaccttctacacacattcacatggtcttgctttcctt 320
Query: 121 ctgcacaacatgtgtttgaaggagtactaatgtgccttaacccagcaacacaagtgaata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgcacaacatgtgtttgaaggagtactaatgtgccttaacccagcaacacaagtgaata 380
Query: 181 cttccctaaaattctgctttctgttaaaaaaaattttactaattacactttagatcatga 240
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct: 381 cttccctaaaattctgctttccgttaaaaaaatttttactaattacactttagatcatga 440
Query: 241 aaatcacatgaagtttcctacaacttctctaagtcactcatgttgatat 289
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaatcacatgaagtttcctacaacttctctaagtcactcatgttgatat 489
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space: 192324
Effective search space used: 192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
