BAC Information

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BAC

Clone NameMSMg01-189E03
Chromosome6 (Build37)
Map Location 86,207,696 - 86,292,808
singlet/doubletdoublet
Overlap geneTgfa, LOC665233, LOC100043094, LOC100043527
Upstream geneSfxn5, Rab11fip5, Noto, Smyd5, 1700040I03Rik, Cct7, Fbxo41, Egr4, Alms1, LOC100043497, EG665134, LOC100043493, Cml3, LOC623273, Cml5, Cml4, LOC100043504, LOC100043508, Cml2, LOC665177, 1700019G17Rik, Cml1, Tprkb, EG434057, LOC665213, Dusp11, Figla, Add2
Downstream gene2010309E21Rik, Snrpg, Pcyox1, Tia1, C87436, 2310040G24Rik, Pcbp1, Asprv1, Mxd1, 2610209M04Rik, Gmcl1, Anxa4, 2610306M01Rik, Aak1, LOC100043555, Nfu1, Gfpt1, D6Ertd527e, Antxr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-189E03.T7 (MSMg01no189_e03.b1)MSMg01-189E03.TJ (MSMg01no189_e03.g1)
ACCAG380005AG380006
length735733
length of high quality
(start - end)
317 (62 - 378)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no189_e03.b1 PHD_FILE: MSMg01no189_e03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:11 2005CHROMAT_FILE: MSMg01no189_e03.g1 PHD_FILE: MSMg01no189_e03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,292,496 - 86,292,808)(86,207,696 - 86,207,984)
sequence
AAATTGGNNNAACAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCGCGGAATTCTCTGTGGGCAGCAGATGGTTTGACAAGCA
GGCTATGAGTGGACATAACAGACATTTTAAAATTATTTTTAAGATTTATT
TTACTTATATGACTATTTTGGCTGCATATATGTATTTTTACCACATGCAT
ATACCCAGTGCTGAATAAAGTCAAAAGGTCAGAAGGTTAAAATAAGGCCT
TGGATTCCTTAGAATTGGACTTACAGACAGCTGCGAGGTACCATGTGAGA
GAGGCGCAGGGAGATCCACACAGTCTGCTGGAAATGGAGATAGAAAGGTC
AAAATAAGTAATCTTAAATCAAAACATTTTTTTGGCGCCCACCCCTCGCT
GGTTAAGACCACTGCTCTTCTGAAGGTCCTGAGCAACTGACCTGGAACAA
TTCCCAGCAACCAGATGGTGGCTCACAACCACCCGTAATGAGATCTGATC
TTCTGGTGCATCTGAAGTCAGCTACAGTGTACTTATATATAATAATAAAT
AAATCTTTGGGCCTGAGCAAGTGGGGACTGAGTGGGGTTGACTGGAGTGA
GCAGAGGTCCTAAATAGTTCAATTTCCAACAACAACATGAAGGCTCACAA
CCATTTGTAGAGCTACAGTGTACTCGCATACATAAAATAAACAAATAAAT
CTTGAAAAAGAGGAAAGAAACCATGACATGCGGCA
TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCCAGCTGGCAGGGCTCACCTGTG
GCTCGCAGAGCCCCCTCTATTCTGATTCTGAGAACTCGGTACAGGTATCC
CCTCATTGACTGCATGAATGAAAATTGGGGGAGAAGCGTTTTCAGAACGC
CGACTGACACCCAAGAACATGACATTAGAATAAAGGCTTTCTGGCTTGAA
GATATGAAAGCAATGGTCCTTCTGTTTGAGATCAAATGATTGAATGCTGG
GCTGGGGGACATTTGGCATCTGTCTTCAAAGCAAAACCATAGCCTGCTTA
TTTTTTTCCCTTAAATTTTTTTAGGCTCCCCCCGCCCGACAAAAAGAACA
ATCTGTAGGCTGAACCCAGGGTCTCAGGAGCAATAACAGACGTCTGCCCT
CTTCTATCCCCGGAGTTCATAATAGAGAATGCAGGCTAGAAGGGGGCTGG
CCTTCCCAGCTCCAAGGGAAGTAAGGGCCCCAGCAATACTTGGGTGCAGG
TAGGTGACCCCTGAAATCTACATACTGTGACATCTAGTGGGACACAGAAG
TCAATTCCATCCCAAACTTTCAATTAACTCAGTGACATTTTAGGTTCCTA
AATTTTCTTTACCAATTTAAGCCATTTTCCTTGGGAATCTCAGCTCCTTT
CATCCTAAAATGCTCCTGAAATGTTTTGATAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no189_e03.b1 MSMg01no189_e03.b1 CHROMAT_FILE:
MSMg01no189_e03.b1 PHD_FILE: MSMg01no189_e03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:11 2005
         (317 letters)



>mm_chr6_86292204_86292920
          Length = 717

 Score =  582 bits (301), Expect = e-171
 Identities = 310/313 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctctgtgggcagcagatggtttgacaagcaggctatgagtggacataacagaca 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ggaattctctgtgggcagcagatggtttgacaagcaggctatgagtggacataacagaca 546

                                                                       
Query: 64  ttttaaaattatttttaagatttattttacttatatgactattttggctgcatatatgta 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 ttttaaaattatttttaagatttattttacttatatgactattttggctgcatatatgta 486

                                                                       
Query: 124 tttttaccacatgcatatacccagtgctgaataaagtcaaaaggtcagaaggttaaaata 183
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tttataccacatgcatatacccagtgctgaataaagtcaaaaggtcagaaggttaaaata 426

                                                                       
Query: 184 aggccttggattccttagaattggacttacagacagctgcgaggtaccatgtgagagagg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 aggccttggattccttagaattggacttacagacagctgcgaggtaccatgtgagagagg 366

                                                                       
Query: 244 cgcagggagatccacacagtctgctggaaatggagatagaaaggtcaaaataagtaatct 303
            ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 365 tgcagggagatccacacagtctgctggaaatggagacagaaaggtcaaaataagtaatct 306

                        
Query: 304 taaatcaaaacat 316
           |||||||||||||
Sbjct: 305 taaatcaaaacat 293


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no189_e03.g1 MSMg01no189_e03.g1 CHROMAT_FILE:
MSMg01no189_e03.g1 PHD_FILE: MSMg01no189_e03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:11 2005
         (292 letters)



>mm_chr6_86207496_86208187
          Length = 692

 Score =  559 bits (289), Expect = e-164
 Identities = 289/289 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cccagctggcagggctcacctgtggctcgcagagccccctctattctgattctgagaact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cccagctggcagggctcacctgtggctcgcagagccccctctattctgattctgagaact 260

                                                                       
Query: 61  cggtacaggtatcccctcattgactgcatgaatgaaaattgggggagaagcgttttcaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cggtacaggtatcccctcattgactgcatgaatgaaaattgggggagaagcgttttcaga 320

                                                                       
Query: 121 acgccgactgacacccaagaacatgacattagaataaaggctttctggcttgaagatatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acgccgactgacacccaagaacatgacattagaataaaggctttctggcttgaagatatg 380

                                                                       
Query: 181 aaagcaatggtccttctgtttgagatcaaatgattgaatgctgggctgggggacatttgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagcaatggtccttctgtttgagatcaaatgattgaatgctgggctgggggacatttgg 440

                                                            
Query: 241 catctgtcttcaaagcaaaaccatagcctgcttatttttttcccttaaa 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catctgtcttcaaagcaaaaccatagcctgcttatttttttcccttaaa 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)