BAC Information

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BAC

Clone NameMSMg01-190G06
Chromosome6 (Build37)
Map Location 44,671,542 - 44,671,826
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC546897, LOC665779
Downstream geneLOC100040210, Cntnap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-190G06.T7 (MSMg01no190_g06.b1)MSMg01-190G06.TJ (MSMg01no190_g06.g1)
ACCAG380752AG380753
length688692
length of high quality
(start - end)
324 (9 - 332)296 (57 - 352)
definitionCHROMAT_FILE: MSMg01no190_g06.b1 PHD_FILE: MSMg01no190_g06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:37 2005CHROMAT_FILE: MSMg01no190_g06.g1 PHD_FILE: MSMg01no190_g06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCCTATAGGGAGAGGATCCGCGGAATTCTGTTTTGTTCTGTATCTCAT
TTTTAATTGTGTTACTCCATTTGCTGGTGTTTAAGTACTTGAATTCTTTA
AATGTTTGGGATATCAGCCTTCTCTTGGATGTAGTGTTGGGGAAAATCTT
TTACCATTCTGTAGACTGCAATTTCTATTGATAGTGTCCTTTGCCTTACT
GAAGTTTTTCAGTTTCATAAGGTTCCATTTATTATTTGATTTTTCTTTTT
TATTGGATATTTTATTTACATTTCAAATGTTATCCCCCTTCCCAGTTTCC
TCTCCACAAGCCCTCTATCCCCTCTCTTGTCTTTTTCTCCCTACCTCCCC
CCACGGCTCTCACCTACCCTGCCACCTACTCCTGCCTCAGCGCCATAACA
TTCCCCTAAACTGGGGCATGAAGCCACCACCAGGCCAAGGGGCTACCCTC
CCATTGATGTCAGATAAGGCAATCCTCTGATAAATATGAGACTGGAGCCA
TGGGTTCCCACATGTGTACTCTTGGTAGATTTAATCCCTGGATATTTTGG
TGGTCTGGTTGATTGATATTGTTGTTTTACCTATGGGGTTCAGTTCCTTC
ATTCTTTCCCCTAACTCATCCTTTGGGGTACTCAAGCTCAATCAGATCGT
TGGCTTCTAGTGTCCACTTCTGTATTGTGCACGTTCTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTTTCATAAATACTGAAATGCTGCTTATTGTCCTTTATGATGCAG
AAAGGCTCATGATAAAAGCAGACAGCTGAAAATTTAAGAAAGAATATTTT
GCATTAAATTTCAGAACATCTAAATAATTTAATATATTCCCAAATGATTG
GTATTGTTTAATATATCCAGTTTATATTAATAAATTCTATAAATAATTTG
CTAGTGAAAACATTGGCTAAATTAAGCAGTAAATATTTTGTAGACCAAAT
ATATTTCACATACAGAAACACTGCTTTGATGATTACTATATTTTTTACCT
CACCCCCCCTGTAGTAAATATTACTGTTAATTATATTTGAATCAAAAAAT
ACTTGAAGTTAGAATGTACTTCCATTTGTAAAACTTTACAAAATATTTGT
ATTTTGAGCAATTATAAACTACCTAATCTTAATTTATTTGTTTTCAGCTT
ACATTTTTATATTTTAATAATAAATGGAAATGTATTGCATTCATATTTTC
AAATGTATACATGTCATTTATTTAAAAAATATAAGATAAAATACATCTTT
ACAGATTAATATTTTATTCTCTTCCAATCTCTTTTGGCACATTTACAACT
TTAACATATGAAAAAAAAATCAATGAATACCATTGTGTGGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no190_g06.g1 MSMg01no190_g06.g1 CHROMAT_FILE:
MSMg01no190_g06.g1 PHD_FILE: MSMg01no190_g06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:37 2005
         (296 letters)



>mm_chr6_44671463_44672158
          Length = 696

 Score =  536 bits (277), Expect = e-157
 Identities = 283/285 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttcataaatactgaaatgctgcttattgtcctttatgatgcagaaaggctcatgataaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 tttcataaatactgaaatgctgcttattgtcctttatgatgcagaaaggctcatgataaa 305

                                                                       
Query: 61  agcagacagctgaaaatttaagaaagaatattttgcattaaatttcagaacatctaaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 agcagacagctgaaaatttaagaaagaatattttgcattaaatttcagaacatctaaata 245

                                                                       
Query: 121 atttaatatattcccaaatgattggtattgtttaatatatccagtttatattaataaatt 180
           ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 244 atttaatatattcccaaatgattggtattatttaatatgtccagtttatattaataaatt 185

                                                                       
Query: 181 ctataaataatttgctagtgaaaacattggctaaattaagcagtaaatattttgtagacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 ctataaataatttgctagtgaaaacattggctaaattaagcagtaaatattttgtagacc 125

                                                        
Query: 241 aaatatatttcacatacagaaacactgctttgatgattactatat 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 aaatatatttcacatacagaaacactgctttgatgattactatat 80


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space:   197169
Effective search space used:   197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)