BAC Information

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BAC

Clone NameMSMg01-191H04
Chromosome6 (Build37)
Map Location 28,837,642 - 28,907,753
singlet/doubletdoublet
Overlap geneSnd1
Upstream geneGrm8, 6530409C15Rik, AA407452, LOC100041304, LOC384360, Gcc1, Arf5, Fscn3, Pax4, LOC100041350, Lrrc4
Downstream geneLOC100041367, Lep, Rbm28, D330027H18Rik, Impdh1, 2310016C08Rik, AI507611, BC048651, Calu, Opn1sw, 4921511K06Rik, Flnc, Atp6v1f, EG668210, Crim2, Irf5, Tnpo3, Tspan33, Smo, 4631427C17Rik, D330017J20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-191H04.T7 (MSMg01no191_h04.b1)MSMg01-191H04.TJ (MSMg01no191_h04.g1)
ACCAG381461AG381462
length725742
length of high quality
(start - end)
602 (36 - 637)232 (127 - 358)
definitionCHROMAT_FILE: MSMg01no191_h04.b1 PHD_FILE: MSMg01no191_h04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:03 2005CHROMAT_FILE: MSMg01no191_h04.g1 PHD_FILE: MSMg01no191_h04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,837,642 - 28,838,239)(28,907,522 - 28,907,753)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTTTT
GCCCACTATCTATAATGAAAAGAGACAAGCCTTACCCCTACCTTGTAGAA
CTTCTATTCCACCATGAGACGGTGAACATAAGTTAAATAAAAGGGGGAAA
TAGAAGTCTAGTCCAGAGGATCAGGGGCAGAAATGCATGCTTTACATGGG
GGTCATTGTACTTGACATGAAGAAGGAAGTGTTTTATCAGAGAGTTGAGG
GGTGGAATAGATAGCCAGGTGGGACATGAAGGGAAAAAAACCTGTGAACA
CATGGATTAGCCAGTGCAAAGTTGAGCAAACCCAGAGAGCAATGTGGCTG
TACAGCCTGCAGCTTGCTCTAAGTGCTAGTCTCCTCTGGGGGCCACCCAT
CTGTAGCAGCATTTTTTGGTTGCTCATTCAAGAGCACCTCCATCTTGACC
ACTTCCCATCTTCTTATGTCCCTCAGATCACAGAATACCTGAATGCCCAG
GAATCAGCCAAGAGTGCCAGGGTGAGTTCTTGCCTGGGGTCATAGAGGGG
TTGAGTTTGAGAGGCGTGGCCTGGTGGCTTCCATTGGGTAACAGGTCCCT
TAAGAGTCGTGTCCTGTCTCCCTCTCTCACAGCTGAACCTGTGGCGCTAT
GGAGACTTCCGCGCTGATGACGCTGATGAGTTTGGCTACAGTCGCTAAGG
AGAACTTGCCTGGCCCCCAGCACCG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTGTCCCGAGAAATTCTTGGCCCTTCCATTTCTGGAAGTA
GCAGCTAAGCTACACCGTCAACCCTTGTCATGTTCATGTCTAACCTGCGG
GAAACACGGTTGTTCTTGCACAGCTGCGATTGCGGTAAGTGAATGAAGTC
TCCGAGGGACCGAGAGCCTGACACCGAAGTCGTAACCACACCAGCTGGAT
GCACTTGCCCTGGGGATAAATGTCCACACGCACAAATGCAGCAGGAGGAA
CTTTGCAAAATGAAACTTGTATTTACTGGAAAGATGCTGCAGTGGTTAAG
AGTGCTTATTTTTTTTGCCCACCCCTGACTTTGGCTCTGAGCATCCATGA
TACTTGGCTCACAAAAGGCTATAAAGCCCAACTCCAGGGGAATTTGCCAC
CTCTGGCCTCTGAGGATACCTGTGCCCAAGTGCACATACACACAGAGAAA
ACACTCACTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCACACACACACACACACACACACACACACACACTAGAAT
TAGAGAGAATCAATGAATTGGAAGATAATAGCAATATTTCAGTACAAATG
AGTGCATAGAAACTAGGTAAGAGATAATTTGATTTATGTTTAATAACAGT
TCTAGAGGAGAAAAGAGCAAAAAAACCGAAGAGCTTACAGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no191_h04.b1 MSMg01no191_h04.b1 CHROMAT_FILE:
MSMg01no191_h04.b1 PHD_FILE: MSMg01no191_h04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:08:03 2005
         (602 letters)



>mm_chr6_28837438_28838439
          Length = 1002

 Score = 1133 bits (586), Expect = 0.0
 Identities = 595/598 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttttgcccactatctataatgaaaagagacaagccttacccctaccttgtaga 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 205 gaattccttttgcccactatctataatgaaaagagacaagccttacccctaccttgcaga 264

                                                                       
Query: 65  acttctattccaccatgagacggtgaacataagttaaataaaagggggaaatagaagtct 124
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acttctattccagcatgagacggtgaacataagttaaataaaagggggaaatagaagtct 324

                                                                       
Query: 125 agtccagaggatcaggggcagaaatgcatgctttacatgggggtcattgtacttgacatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agtccagaggatcaggggcagaaatgcatgctttacatgggggtcattgtacttgacatg 384

                                                                       
Query: 185 aagaaggaagtgttttatcagagagttgaggggtggaatagatagccaggtgggacatga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aagaaggaagtgttttatcagagagttgaggggtggaatagatagccaggtgggacatga 444

                                                                       
Query: 245 agggaaaaaaacctgtgaacacatggattagccagtgcaaagttgagcaaacccagagag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agggaaaaaaacctgtgaacacatggattagccagtgcaaagttgagcaaacccagagag 504

                                                                       
Query: 305 caatgtggctgtacagcctgcagcttgctctaagtgctagtctcctctgggggccaccca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 caatgtggctgtacagcctgcagcttgctctaagtgctagtctcctctgggggccaccca 564

                                                                       
Query: 365 tctgtagcagcattttttggttgctcattcaagagcacctccatcttgaccacttcccat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tctgtagcagcattttttggttgctcattcaagagcacctccatcttgaccacttcccat 624

                                                                       
Query: 425 cttcttatgtccctcagatcacagaatacctgaatgcccaggaatcagccaagagtgcca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cttcttatgtccctcagatcacagaatacctgaatgcccaggaatcagccaagagtgcca 684

                                                                       
Query: 485 gggtgagttcttgcctggggtcatagaggggttgagtttgagaggcgtggcctggtggct 544
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 685 gggtgagttcttgcctggggtcatggaggggttgagtttgagaggcgtggcctggtggct 744

                                                                     
Query: 545 tccattgggtaacaggtcccttaagagtcgtgtcctgtctccctctctcacagctgaa 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tccattgggtaacaggtcccttaagagtcgtgtcctgtctccctctctcacagctgaa 802


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space:   587264
Effective search space used:   587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no191_h04.g1 MSMg01no191_h04.g1 CHROMAT_FILE:
MSMg01no191_h04.g1 PHD_FILE: MSMg01no191_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:08:03 2005
         (232 letters)



>mm_chr6_28907322_28907953
          Length = 632

 Score =  418 bits (216), Expect = e-121
 Identities = 228/232 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtcatgttcatgtctaacctgcgggaaacacggttgttcttgcacagctgcgattgcggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gtcatgttcatgtctaacctgcgggaaacacggttgttcttgcacagctgcgattgcggt 373

                                                                       
Query: 61  aagtgaatgaagtctccgagggaccgagagcctgacaccgaagtcgtaaccacaccagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 aagtgaatgaagtctccgagggaccgagagcctgacaccgaagtcgtaaccacaccagct 313

                                                                       
Query: 121 ggatgcacttgccctggggataaatgtccacacgcacaaatgcagcaggaggaactttgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ggatgcacttgccctggggataaatgtccacacgcacaaatgcagcaggaggaactttgc 253

                                                               
Query: 181 aaaatgaaacttgtatttactggaaagatgctgcagtggttaagagtgctta 232
           ||||||||||||| |   ||||||||||||||||||||||||||||||||||
Sbjct: 252 aaaatgaaacttggagggactggaaagatgctgcagtggttaagagtgctta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space:   138929
Effective search space used:   138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)