Query= MSMg01no194_m08.b1 MSMg01no194_m08.b1 CHROMAT_FILE:
MSMg01no194_m08.b1 PHD_FILE: MSMg01no194_m08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:45 2005
(367 letters)
>mm_chr6_54336171_54336937
Length = 767
Score = 642 bits (332), Expect = 0.0
Identities = 352/362 (97%), Gaps = 6/362 (1%)
Strand = Plus / Plus
Query: 6 aattcaaagggtggcgtctatagtctgtgaaaacaaactgccatttccacgatgacattt 65
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 212 aattcaaagggtggtgtctatagtctgtgaaaacaaactgccattttcacgatgacattt 271
Query: 66 accttgctttttttttttttttaatggttatgtggatgaattgagcctgtttccaatggc 125
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 272 accttgcttttttttt------aatggttatgtggatgaattgagcctgtttccaatggc 325
Query: 126 aacatctccaagtctcaggaacagcaattttacatcaatttactattaatagaaaacaga 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aacatctccaagtctcaggaacagcaattttacatcaatttactattaatagaaaacaga 385
Query: 186 acagcaagcagacagagcaagcaacttagtgcctactatggctagcaggctggtgagcaa 245
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 386 acagcaagcagacagagcaagcaacttagcgcctactacggctagcaggctggtgagcaa 445
Query: 246 gtgggtgagcatgccatttgcaaggatgctgctgcttcgatgggtgaggttatatagcac 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gtgggtgagcatgccatttgcaaggatgctgctgcttcgatgggtgaggttatatagcac 505
Query: 306 caagccctctgatgaatatcacacacaatgaccttgtaggaacagagtctttgagctaaa 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 caagccctctgatgaatatcacacacaatgaccttgtaggaacagagtctttgagctaaa 565
Query: 366 at 367
||
Sbjct: 566 at 567
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 767
Length adjustment: 9
Effective length of query: 358
Effective length of database: 758
Effective search space: 271364
Effective search space used: 271364
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no194_m08.g1 MSMg01no194_m08.g1 CHROMAT_FILE:
MSMg01no194_m08.g1 PHD_FILE: MSMg01no194_m08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:45 2005
(603 letters)
>mm_chr6_54486244_54487246
Length = 1003
Score = 1096 bits (567), Expect = 0.0
Identities = 594/603 (98%)
Strand = Plus / Minus
Query: 1 caggagcagcagtgccttactggatgaccacctcccagaagaaggcaatgctgcagcctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 caggagcagcagtgccttactggatgaccacctcccagaagaaggcaatgctgcagcctc 744
Query: 61 ggatagaagtgagcatttcccgagaaccaacttgtcccataagcagcaagtctttcttag 120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ggatagaagtgatcatttcccgagaaccaacttgtcccataagcagcaagtctttcttag 684
Query: 121 cccaccttccagaatcagctgagacagtgatcaacagactgtacctcaactttgtgtacc 180
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 683 cccaccttccagaatcagctgagacagtgatcaacagaccgtacctcgactttgtgtacc 624
Query: 181 cacattagctccctattaaaacctagagctcatcaccggtaacccaaagaagttagggtc 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 cagattagctccctattaaaacctagagctcatcaccggtaacccaaagaagttagggtc 564
Query: 241 actggacccttcctgacatcactagtccccgtcattctctttcaccgtggctgctttttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 actggacccttcctgacatcactagtccccgtcattctctttcaccgtggctgctttttt 504
Query: 301 taattggcacattgcataggcagctgagcctagtctgctggggctcctggagctggggag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 taattggcacattgcataggcagctgagcctagtctgctggggctcctggagctggggag 444
Query: 361 actgccctaaatgtcaggtgactgatccaccatctcccagtagtaccacactggggatca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 actgccctaaatgtcaggtgactgatccaccatctcccagtagtaccacactggggatca 384
Query: 421 ggcctttaattccacatgaagccatggtgatgcagaatggcctgctttggacactgcagt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ggcctttaattccacatgaagccatggtgatgcagaatggcctgctttggacactgcagt 324
Query: 481 gaatacattttgaagacagagatttcagttccatttaaagaaatatggagtttcgagacc 540
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 323 gaatacattttgaagacagagatttcagttccatttaaagaaacatggagtttcgaggcc 264
Query: 541 tgctgggcctgctttttgttctgtaagagtcctttttaaaaacgaattattgccaggcag 600
||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 263 tgctgggccagctttttgttctgcaagagtcctttttaaaaacgaattattgccgggcag 204
Query: 601 tgg 603
|||
Sbjct: 203 tgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space: 588849
Effective search space used: 588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
