Query= MSMg01no195_h04.b1 MSMg01no195_h04.b1 CHROMAT_FILE:
MSMg01no195_h04.b1 PHD_FILE: MSMg01no195_h04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:14:40 2005
(648 letters)
>mm_chr6_14156159_14157206
Length = 1048
Score = 1216 bits (629), Expect = 0.0
Identities = 641/645 (99%)
Strand = Plus / Minus
Query: 4 ggaattctgcatgataacgactgactgatttcaaggttctaaagtctagtgtggctgcct 63
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggaattctgcatgaaaacgactgactgatttcaaggttctaaagtctagtgtggctgcct 622
Query: 64 acaaggaaccattcattctaactcacagatttttctccctgttgatatgtagaaacaggc 123
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acaaagaaccattcattctaactcacagatttttctccctgttgatatgtagaaacaggc 562
Query: 124 aattccacttaattctccaccaaatatttaaacagtatgcattttaaaagataatataaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aattccacttaattctccaccaaatatttaaacagtatgcattttaaaagataatataaa 502
Query: 184 cagtaatgaaaaagaattgtcattgtaatcatatctatttgccaccataatctgccgaag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagtaatgaaaaagaattgtcattgtaatcatatctatttgccaccataatctgccgaag 442
Query: 244 tttatagtagcacttgtttccctgccttatttttgtctcctaattcttaatcttttcaat 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttatagtagcacttgtttccctgccttatttttgtctcctaattcttaatcttttcaat 382
Query: 304 aatagcttatgtttgttcctttccttttcattgctgatcttagaagcaaatgtttttatt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatagcttatgtttgttcctttccttttcattgctgatcttagaagcaaatgtttttatt 322
Query: 364 gcaagtgtcaagaacagagcctgccaataagtatatgttagagaagcagacacacattta 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcaagtgtcaagaacagagcctgccaataagtatatgttagagaagcagacacacattta 262
Query: 424 agtctgtacgttggctgaaattaatttcactatgtgatataagaacctaagcagtagtct 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtctgtacgttggctgaaattaatttcactatgtgatataagaacctaagcagtagtct 202
Query: 484 tctgcccaggaatatctgctggggtggactgctagctagtctgatcccctggagacacca 543
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 tctgcccaggaatatctgctggggtggactgttagctagtctgatcccctggagacacca 142
Query: 544 tatcctgagacaacccagaagatccacttcactctaggttactgacactaaggtctgagg 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 tatcctgagacaacccagaagatccacttcactctaggttactgacactaaggtctgagg 82
Query: 604 catctcaggagatctgctatacacaaggcaaccaagcaactgatc 648
|||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 81 catcccaggagatctgctatacacaaggcaaccaagcaactgatc 37
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space: 662244
Effective search space used: 662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no195_h04.g1 MSMg01no195_h04.g1 CHROMAT_FILE:
MSMg01no195_h04.g1 PHD_FILE: MSMg01no195_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:14:40 2005
(385 letters)
>mm_chr6_14114087_14114877
Length = 791
Score = 638 bits (330), Expect = 0.0
Identities = 375/392 (95%), Gaps = 8/392 (2%)
Strand = Plus / Plus
Query: 1 tttttgttgtcttttgttttgttgtgg-ttttttttt-ttct--tttctccttccaaaac 56
|||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||
Sbjct: 201 tttttgttgtcttttgttttgttgtgcatttttttttcttctcttttctccttccaaaac 260
Query: 57 tctacttttggtgagggaaggattagtcaagattattggttcttcttatatgagtaagtt 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctacttttggtgagggaaggattagtcaagattattggttcttcttatatgagtaagtt 320
Query: 117 ttttttt---cctgggattttgaattttgggtatttttgaatttagaaatagactgacta 173
||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 ttttttttttcctgggattttgaattttgggtatttttgaatttagaaatattctgacta 380
Query: 174 tgattcttattctgaaattccactttttaccttaatgttttttctctgccatgtagtgat 233
||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct: 381 cgattcttattctgaaattccaatttttaccttaat-ttttttctctgccatgtagtgat 439
Query: 234 cctgttctggaatgtgaagacccattttttttaaagcaaatagaaagtattgttttaatg 293
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cctgttttggaatgtgaagacccattttttttaaagcaaatagaaagtattgttttaatg 499
Query: 294 attcccgctgatttaaaatgtgtacagttatattgccccattactggcattgggaggcgg 353
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 500 attcccgctgatttaaaatgtgtacagttatattgccccgttactggcattgggaggagg 559
Query: 354 tctgtgcttctcattttacctgaactttaagt 385
|||| |||||||||||||||||||||||||||
Sbjct: 560 tctgcgcttctcattttacctgaactttaagt 591
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 791
Length adjustment: 9
Effective length of query: 376
Effective length of database: 782
Effective search space: 294032
Effective search space used: 294032
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
