BAC Information

Click to search

BAC

Clone NameMSMg01-195I21
Chromosome6 (Build37)
Map Location 85,777,277 - 85,777,595
singlet/doubletsinglet
Overlap genenone
Upstream geneExoc6b, Npm3-ps1, EG545861, EG623016, Spr, LOC665086, LOC665089, Emx1, Sfxn5, Rab11fip5, Noto, Smyd5, 1700040I03Rik, Cct7, Fbxo41, Egr4, Alms1, LOC100043497, EG665134, LOC100043493, Cml3, LOC623273, Cml5
Downstream geneCml4, LOC100043504, LOC100043508, Cml2, LOC665177, 1700019G17Rik, Cml1, Tprkb, EG434057, LOC665213, Dusp11, Figla, Add2, Tgfa, LOC665233, LOC100043094, LOC100043527, 2010309E21Rik, Snrpg, Pcyox1, Tia1, C87436, 2310040G24Rik, Pcbp1, Asprv1, Mxd1, 2610209M04Rik, Gmcl1, Anxa4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-195I21.T7 (MSMg01no195_i21.b1)MSMg01-195I21.TJ (MSMg01no195_i21.g1)
ACCAG384027AG384028
length721726
length of high quality
(start - end)
323 (45 - 367)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no195_i21.b1 PHD_FILE: MSMg01no195_i21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:14:49 2005CHROMAT_FILE: MSMg01no195_i21.g1 PHD_FILE: MSMg01no195_i21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:14:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGAACTAATGTCATTGATCAGGAAGCCTCTCCAAGCCTCAAACAG
TGGTATCTCACATCCTACCCTCCCTCACACAGGCTTTTACTCAGTCAAGC
CCAACTCATAAACGAGACAGGGTTAAGACCAATGACAGGGCCAAGGCGTT
TGGAACACCATAAAAGGTCACCTTATCAAGGGGTGCTCAGGTTCTATCTG
AACTGCATGAGAGTCTCTGAGTTCCTTCATCATCTTCCTAGTGGTCAAGA
GTCCAGAGGGACACATGTGAACCTCCACAAGGAACACAGGCCTGAGATCA
GCAAGGGCTCTGGTGTTTGTGACACCCCCCGCCCCTGGACAAGAGTTGGA
TCTAGGCTAGAGCCTAGGCCAGGGTGGATAACACTTGGCTCTAAACACTA
TTACCTTTTCCTGATCTCGCCCCCCCAGTGGGTCCCTGCCATCTGCTTAG
CTCTTCTGGGTAAAGGATAACAGCACCTACCCTTCTTCCTTTGTGGTTTT
TCAGACACGAGTTAAAGTCAGCTCTTGGGGTTAATTATCAGTCTTCTGTC
ATCTCTGAACTAGTCAGTCCTCACCATGGCTTCAAACTGGAAACTAAGCT
CCCTGTAACACACAGTATAGCTTTACTATGGTGGTAGAAAAAGCCTACAC
AGAGGCCCTTGCCTGAGATTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTCTTCTTAAAATGTTTTTTAAA
ATATTTATTTATTATTTATATGTAAGTACACTGTAGCTGTCTTCAGACAC
ACCAGTAGAGGGCATCAGATGTCATTACTGATGGTTGTAAGCCACCATGT
AGTTTTTGGGATTTGAACTCAGGACCTGCGGAAGAACAGTCAGTTCTCTT
AACCACTGAGCCATCTCTCCAGCCCCAAATTCTCTCTTCTTTACCTGTGT
TCCCCAGAGGTTCCAATGCTTTCTATGGTGTTCTTATGGGCAGCAGAAGA
AATGAGGGCAAGGTATTGATGAACCCGNAGCGGGNCCAAGCCTCGGGTAC
TGTGAACTGCAGTGACCAAGAGGGAAAAGACAAAAAACACAGGTCCAGGT
TTCCCTAAACAGAACTCAGAAGTGGCACCCTGAGAGTCAAAAGTTAAGTC
GCTGGGATTTCCCTCTGTGAGCCATTCTCTCATGAAGGCACCATAAAGAG
ATCACAGAATCTCCTTCTCCAACCTCTGGCCACAGCTCACTGGGAGCCGG
GACCAAGGAATTTAGTGTCAACCTAACTGAATGGAACATTATTTCTGGAT
GAGACCATGAAGTGTTTCTAAGGAAGTTATGTGGATCCAAGGATGTTGTG
TGCAAGGTCCACTCTCAACATGGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no195_i21.b1 MSMg01no195_i21.b1 CHROMAT_FILE:
MSMg01no195_i21.b1 PHD_FILE: MSMg01no195_i21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:14:49 2005
         (323 letters)



>mm_chr6_85777073_85777795
          Length = 723

 Score =  617 bits (319), Expect = 0.0
 Identities = 319/319 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagaactaatgtcattgatcaggaagcctctccaagcctcaaacagtggtatct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagaactaatgtcattgatcaggaagcctctccaagcctcaaacagtggtatct 264

                                                                       
Query: 65  cacatcctaccctccctcacacaggcttttactcagtcaagcccaactcataaacgagac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cacatcctaccctccctcacacaggcttttactcagtcaagcccaactcataaacgagac 324

                                                                       
Query: 125 agggttaagaccaatgacagggccaaggcgtttggaacaccataaaaggtcaccttatca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agggttaagaccaatgacagggccaaggcgtttggaacaccataaaaggtcaccttatca 384

                                                                       
Query: 185 aggggtgctcaggttctatctgaactgcatgagagtctctgagttccttcatcatcttcc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aggggtgctcaggttctatctgaactgcatgagagtctctgagttccttcatcatcttcc 444

                                                                       
Query: 245 tagtggtcaagagtccagagggacacatgtgaacctccacaaggaacacaggcctgagat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tagtggtcaagagtccagagggacacatgtgaacctccacaaggaacacaggcctgagat 504

                              
Query: 305 cagcaagggctctggtgtt 323
           |||||||||||||||||||
Sbjct: 505 cagcaagggctctggtgtt 523


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)