BAC Information

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BAC

Clone NameMSMg01-197H02
Chromosome6 (Build37)
Map Location 119,195,075 - 119,195,386
singlet/doubletsinglet
Overlap geneCacna2d4
Upstream gene1700069P05Rik, Bms1, Zfp248, Zfp9, Ankrd26, Cacna1c, Dcp1b
Downstream geneLrtm2, Adipor2, Wnt5b, Fbxl14, Erc1, LOC666887, Rad52, Wnk1, EG406236, Ninj2, B4galnt3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-197H02.T7 (MSMg01no197_h02.b1)MSMg01-197H02.TJ (MSMg01no197_h02.g1)
ACCAG385171AG385172
length7281,011
length of high quality
(start - end)
315 (45 - 359)44 (125 - 168)
definitionCHROMAT_FILE: MSMg01no197_h02.b1 PHD_FILE: MSMg01no197_h02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:20 2005CHROMAT_FILE: MSMg01no197_h02.g1 PHD_FILE: MSMg01no197_h02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTACTCTGGGGACAGACTGGGTTCCTCAGGCATCAAGGGCTCAGAAT
CAGGGAGGGTTAAAGGAATCTAGGCACAGAAACAGACACCCACAGCTAAC
TGGGAATGTCTGACAGACAGCAGGGAGCGTGTCAGTGGTGGGAGCCACAC
TTGCTCTTTGCACCCTGTGAGAGGTGCTAACTTTCCAGCCTGGAGACAAA
GAAAGGTTTTCTTTACCATTCCAGTGTCTTTCCAGAAGAGGAGACACCAC
GAGTCTTTCTGGATATGGATACCTGAGATGAGTTGAATTTCTTTAAGTGG
CAAGAAACCATAAGTCAAGACCCACAACCATGCGTGTGTCCATGCGTGTG
TGTGTGTGTGTGTGTGCACATGTGTGTATATGGGGGCTGGCACCAGTGTG
GGCATCTGTGGAGGCAAATGACCAACAATGTGTGTCTTCCTCTGTTGTCC
TCCACCTTACTCTCTGAGACAGTCTCCACTGACTATGGAGCTCACCATTT
CCACCAGAGTGNGTGCCCAGTGACTTCCCAGGATCCCCTGTCTCCACCCC
TGCAGCGCTGGGATTACAGGTGTGCACATGCCCAGTTTTTCTGAGTTCAC
GTTGTGTGGCACATTGCCAGCGAGCTGTTCACCATCCACTTTGTCTGCTT
GCCTGCTTGCTTCCGCGCAGGCAATACA
TCACACACACCAACTCCAAAAAAGCCACCCGTTTCTACTTNCNNNTCTAC
TATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCACGTCCAAGTTGCTATCCTGATTAT
CCAAATGGACCTGATGTAACTACCCAGATCTTTACCAGGAGTCAGGAGAA
CAGGGAACAGATGCTACAGTGCTAGTCTGGTAGATAGCGGAGGAGCTCGT
TCTAGATGTTATAGAAGGTGGATAACAACCTCTCTCCCTACAGCATCCCA
AGGAACTTCTAATCTGCCCTTACCTGCCCCCAAATAAAGAACAGAAACAC
ATACAACGCTTATTAACAAAAACCAGTCCTGATACAGAAATAACAATAAT
TGCCAAAAAAATAAAAATACAGTCCTGCTCACACTCAAAATAAAAATACC
CTTAAAACACATAAAACAACCAAATACCCAACCACAATACACACAATTTC
AATAAAATAAAGACTTAGATATCGACAATACCAGAAAACACAAGACAACA
AAATCTACACCAACCATATATATACAACAATAAAAAACGGATTACGTCAA
ATAATAACACTACACTTATTACTATTCCATACAATAAATAAAATATAAAC
AATATACACACAACATAACAATACAGAACTACAACAACAACATCTCCATA
AACCAAGACTAATAATTATAACACCAAACCCAAGCAACACAACAACAAAC
ATAGAATAATATCAACATAACTTCAAAACCTATAACAAATCAAAACAATA
CATACAAAGTACATAAATACTACACAACACAAAAACATCAGTACCAACAC
AACTACAAATTAACCAAAAACCAACCAGATATCAAAATACACATGCAACC
AATATCAACAATCAATAATATATAGAACACCACAAATAAACTACATGCAC
ACACACCCACATCAATAAACTACATAAGAACACTCTCCCTACAACTAATA
CATAATTAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no197_h02.b1 MSMg01no197_h02.b1 CHROMAT_FILE:
MSMg01no197_h02.b1 PHD_FILE: MSMg01no197_h02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:17:20 2005
         (315 letters)



>mm_chr6_119194872_119195586
          Length = 715

 Score =  596 bits (308), Expect = e-175
 Identities = 311/312 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctactctggggacagactgggttcctcaggcatcaagggctcagaatcagggag 63
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 515 ggaattctactctggggacagactgagttcctcaggcatcaagggctcagaatcagggag 456

                                                                       
Query: 64  ggttaaaggaatctaggcacagaaacagacacccacagctaactgggaatgtctgacaga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ggttaaaggaatctaggcacagaaacagacacccacagctaactgggaatgtctgacaga 396

                                                                       
Query: 124 cagcagggagcgtgtcagtggtgggagccacacttgctctttgcaccctgtgagaggtgc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 cagcagggagcgtgtcagtggtgggagccacacttgctctttgcaccctgtgagaggtgc 336

                                                                       
Query: 184 taactttccagcctggagacaaagaaaggttttctttaccattccagtgtctttccagaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 taactttccagcctggagacaaagaaaggttttctttaccattccagtgtctttccagaa 276

                                                                       
Query: 244 gaggagacaccacgagtctttctggatatggatacctgagatgagttgaatttctttaag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 gaggagacaccacgagtctttctggatatggatacctgagatgagttgaatttctttaag 216

                       
Query: 304 tggcaagaaacc 315
           ||||||||||||
Sbjct: 215 tggcaagaaacc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)