BAC Information

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BAC

Clone NameMSMg01-197M02
Chromosome6 (Build37)
Map Location 37,486,590 - 37,486,772
singlet/doubletsinglet
Overlap geneAkr1d1
Upstream geneEG620863, LOC100039370, Ptn, LOC100039514, Dgki, EG665024, Creb3l2
Downstream geneLOC665046, Ybx1-ps2, LOC100039636, LOC665102, Trim24, Svopl, Atp6v0a4, LOC100039657, D630002J15Rik, D630045J12Rik, LOC665125, Zc3hav1l, Zc3hav1, Rpl30-ps1, Ttc26, D130059P03Rik, 3110054G05Rik, 1110001J03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-197M02.T7 (MSMg01no197_m02.b1)MSMg01-197M02.TJ (MSMg01no197_m02.g1)
ACCAG385357AG385358
length720804
length of high quality
(start - end)
676 (45 - 720)183 (79 - 261)
definitionCHROMAT_FILE: MSMg01no197_m02.b1 PHD_FILE: MSMg01no197_m02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:45 2005CHROMAT_FILE: MSMg01no197_m02.g1 PHD_FILE: MSMg01no197_m02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTAAAATTACACTAGTAATTATTAAGCCCTTTATAATAGGACGGCT
GTTATAAGTCTTCTCTGATATGAATACTGCAATGAAAACTCTGACAGTCT
TCAAGTGTCATGAGTTAATTGCTTCTGAGATAGAAAGCAGGCATTTACAA
CTTAGAGCACATTCCAAGAGGTTGTAAAACAATTAACCAAAGGTCATGAC
TAACATTCATTATAGGTGCAAATACTGACTGAGTTTATCTATACAAAACT
TCAGTGTCAACTCAGACACAAAAATTATGGTTTTTAACTTTCCATGAACT
TGTGGAGCCAGTGACAGAAAATTAATGTTTAGACAGATAATTACTCTTAG
TGGCTATGCATGTAAACATTCTCTGTTGTAAACTTCTTATTCAATTTATG
ATTTGAACTTATGTTTGAACGTTTGGTGAACTTTTGTAAAAAAACAAAAG
GTGGGGGGAATGCTTGGAAAACTAGGCAGAAAAAACTAGAAATGATTGCA
TTGCAGGGTATTACTGCATCAGAGCAGGAGGAGAGAGCAAGATTAGGCAG
AGGAAGGAAAAAGACAGCAGAGTAGAATAACTTATGAATTAAAAGAGAAC
TTAGAAATTAAGAGAGAAATACACAGAATGCAGAGAGAAAGAGGGACAAA
GAAGCTGCAGAGAGAGCAGA
TCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGTACAGTCCTCTTGGCACTT
TTTCCATCTATAGATACACTGTTTACTTAACACTCTGATATATACAGTTG
CTGATGCTTTAAACTTTAATTGAGAGAAAGAGAAATTATGAAACAGAACT
GGACTTGGGAGAGTGGACCCTTCACCTTGCCTGGGCAACACAGTAAAACT
GGTTCTGGTAGAGGGGAAGTAGGTGAGGCAGCCAAGAGGGAGCAGAAAAG
TGACCCCCCCCCTCTGTGTCCCAGGGGACAGAAAGCACACCAACTGCCCC
CCCGGGGCCGGAGTGTTTGTTCCCTCCCTTTTATCCCCCCTGGAGGGGGG
GGGCCNCCAGACTGCTGCAGANTAATTGACTGCCGACGGGAGAAGTTGCC
GTGTAGACACGAAAAGTGGGTGGCCTCTTACCCCACCCCCATCTAACAAA
TGTCCCCCCACCCTTGTAAACTTTTTCAAGTCTCCTCCATCCCGGTCTCA
CCCGCAAATATCTTTTTCTCTTTTCTCCGTTCTATACCTTTACCTACCCC
ACCCACCCTTCTAACCCACCACCCCTTCCAACATTGAGCCATTTCCTTCC
GAATATACACCCTTATTTTTTCTATTTTTACCGTCTGCAATCCCCGTCTA
CACCCCCTTTTNNTTTCCCTATCTTTATAGTGACCCGGAGCAAAAGAAAT
AGACTCTCTATTTATTTTTTTCCCTTCTTCCTTCTCTCCCCCTTCCTTCT
CTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no197_m02.g1 MSMg01no197_m02.g1 CHROMAT_FILE:
MSMg01no197_m02.g1 PHD_FILE: MSMg01no197_m02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:17:45 2005
         (183 letters)



>mm_chr6_37486390_37486972
          Length = 583

 Score =  354 bits (183), Expect = e-102
 Identities = 183/183 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagtacagtcctcttggcactttttccatctatagatacactgtttacttaacactctga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagtacagtcctcttggcactttttccatctatagatacactgtttacttaacactctga 260

                                                                       
Query: 61  tatatacagttgctgatgctttaaactttaattgagagaaagagaaattatgaaacagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatatacagttgctgatgctttaaactttaattgagagaaagagaaattatgaaacagaa 320

                                                                       
Query: 121 ctggacttgggagagtggacccttcaccttgcctgggcaacacagtaaaactggttctgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctggacttgggagagtggacccttcaccttgcctgggcaacacagtaaaactggttctgg 380

              
Query: 181 tag 183
           |||
Sbjct: 381 tag 383


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 183
Length of database: 583
Length adjustment: 8
Effective length of query: 175
Effective length of database: 575
Effective search space:   100625
Effective search space used:   100625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)