BAC Information

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BAC

Clone NameMSMg01-198C11
Chromosome6 (Build37)
Map Location 138,443,600 - 138,443,887
singlet/doubletsinglet
Overlap geneLmo3
Upstream geneEps8, Strap, Dera, 9830102E05Rik, Mgst1
Downstream geneIgbp1b, EG668196, EG632971
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-198C11.T7 (MSMg01no198_c11.b1)MSMg01-198C11.TJ (MSMg01no198_c11.g1)
ACCAG385597AG385598
length805723
length of high quality
(start - end)
315 (95 - 409)288 (77 - 364)
definitionCHROMAT_FILE: MSMg01no198_c11.b1 PHD_FILE: MSMg01no198_c11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:18:17 2005CHROMAT_FILE: MSMg01no198_c11.g1 PHD_FILE: MSMg01no198_c11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:18:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTTCTCCCCCTTTTTTTTTTCTTTTTTTTTTTTTAAATATTTTNTTTTT
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCACTTGCTTAGTGTGAAGATAACAATGTAATTCTTTTCTTGTTTT
TACAATTTTTTGTTCGATATTTTCTTCATTTACATTTCAAATGCTATCCC
GAAAGTCCCCTATACCCACCCCAGTCCCTGCTCCCCAACCCACCAACTCC
TGCTTCCTGGCCCTGGCATTCCCCTGTACTGGGGCATATAATCTTTGCCA
GACTAAGGGCCTCTTCTCCCAGTGATGGAAGGCTAGTCCATCTACATATA
CCGCTAGAGACACGAGTACTGGGTGCACTCGTTAGCTCATATTGCTGATC
CACCTATAGGTTTTTTTTTCCCCCCCACCCCCCTGGGTACTTTCTCTACC
TCCTCCATTGGGGTCCCCGCGTTCCATCCAATAAAGAACTGTGAGCATCC
ACTCCAGAGACTGCCCCACCCATGGATCCATATCATAATCAGCCACCACC
TAACGCAGACTCTATTGCATAATTCAGTAAGATTTTGCTACATGACCCTG
ATATAGCTGTCTCTTGTGAAGCTATGACAGATCCTGGTAAACACAATGCA
ATTCTAACCATAGAAGCTCCATTAATTTATCTTTATCTCATCATATACAT
GTCATCTCACTTTTTTTTAATTGTAAATCACTTCCAATATTTTGCCAACC
CCTTGATGAATGCATGCCCTTTAAATACAATGTTTACCTATGTTGACTCT
AATTA
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCCAAACTAACCGTACCATCAGTT
GGCTGACAATTGCCAAGATGACAACAGAAATAATTTCAAACGGTAACAGA
ATCAGCTGTAAGCGAGCGCACCCAGCCATGCCAGCCTCTTCTCCTTTAAG
TGATGCACAGGGTGAAGCAGTGGGAGAAGGAGGCAGTGTGCGCATTAGGC
TCTGCACACACTCGTGGCTGGCTGCAGCAAGTTATTTTCAAAAATCAAGT
TATGGTGCAGGCTTTGTCCTAAGCAGCAGGTGTAGCTATTTGGCAGGAAA
CATTCAAATATAATGTGTCCTTGCACCCCAAAACCTAAATAGACAGTTTC
CTTTCCCTTTCATTACAAATGCCTAACACCGGTGTGATAATTTGATAATT
CAATTCCATTTGCCAGGAAAGATTAGCCATTATTTGACATCTTGAAACCA
CTACCTCCAAATGCTTGCAAGTGATCAAATCAGCTGTTGTATGTTCACTT
AAAGGAATCATCCTCTTTTGTCCTCTATTCTTGTATTGTGTTTCCCTTCA
GGTATGAAGCAGAGTGTGTGTTTGAGGGGGTATGGCGCCAGCTATACATT
TCATTTTTACAGGACGGATTCCGGCTGTTATGAAAAAAAGATTGTCATTG
TAGTCATAGCTAATTATAACTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no198_c11.g1 MSMg01no198_c11.g1 CHROMAT_FILE:
MSMg01no198_c11.g1 PHD_FILE: MSMg01no198_c11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:18:17 2005
         (288 letters)



>mm_chr6_138443400_138444087
          Length = 688

 Score =  542 bits (280), Expect = e-158
 Identities = 286/288 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cccaaactaaccgtaccatcagttggctgacaattgccaagatgacaacagaaataattt 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cccaaactaaccgtaccaccagttggctgacaattgccaagatgacaacagaaataattt 260

                                                                       
Query: 61  caaacggtaacagaatcagctgtaagcgagcgcacccagccatgccagcctcttctcctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaacggtaacagaatcagctgtaagcgagcgcacccagccatgccagcctcttctcctt 320

                                                                       
Query: 121 taagtgatgcacagggtgaagcagtgggagaaggaggcagtgtgcgcattaggctctgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taagtgatgcacagggtgaagcagtgggagaaggaggcagtgtgcgcattaggctctgca 380

                                                                       
Query: 181 cacactcgtggctggctgcagcaagttattttcaaaaatcaagttatggtgcaggctttg 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 cacactcgtggctggctgcagcaagttattttcaaaaatcaagttatggtgcgggctttg 440

                                                           
Query: 241 tcctaagcagcaggtgtagctatttggcaggaaacattcaaatataat 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcctaagcagcaggtgtagctatttggcaggaaacattcaaatataat 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)