BAC Information

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BAC

Clone NameMSMg01-201D12
Chromosome6 (Build37)
Map Location 125,136,788 - 125,137,024
singlet/doubletsinglet
Overlap geneNcapd2
Upstream geneVmn2r27, LOC623374, EG622297, Cd163, LOC100043530, 1700013D24Rik, 1700027F06Rik, 1700060L04Rik, Pex5, Clstn3, C1rl, C1r, C1s, LOC667277, EG317677, Mboat5, Emg1, Phb2, Ptpn6, Grcc10, Atn1, Eno2, Lrrc23, Spsb2, Tpi1, Usp5, Cdca3, Gnb3, Leprel2, Gpr162, Cd4, Lag3, Ptms, Mlf2, EG667343, Cops7a, C530028O21Rik, Zfp384, Ing4, Acrbp, Gpr92, Chd4, Nol1, A930037G23Rik, Gapdh
Downstream geneMrpl51, Vamp1, Tapbpl, Cd27, 4930417O13Rik, Tuba3a, Ltbr, Scnn1a, Tnfrsf1a, Plekhg6, Cd9, Vwf, Tmem16b, Ntf3, LOC100043565
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-201D12.T7 (MSMg01no201_d12.b1)MSMg01-201D12.TJ (MSMg01no201_d12.g1)
ACCAG386859AG386860
length727778
length of high quality
(start - end)
---237 (132 - 368)
definitionCHROMAT_FILE: MSMg01no201_d12.b1 PHD_FILE: MSMg01no201_d12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:21:12 2005CHROMAT_FILE: MSMg01no201_d12.g1 PHD_FILE: MSMg01no201_d12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:21:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXAGTACTCGCAACCTATGAGGCCTATATAACATTTCCAAGTGT
CATCTGTGTAACAAGTTACCCCCATAGCAGAGAACTAGGACAATCTTAGC
ATCCCAGTGAAACTCCAAACACTCATCTGATCTGTCCATTTCACTCTGGC
CACCAGCCCAGCCTGTCTGTTTAACAGTAATCAATAGGCTAATGGAAATA
TAACGAAGAATACTCGGAATGGCTTACAGGGATCAACTCACACCAATTCT
CTTTGGTAACTACTCATATTTGAGCAGAAAAGGACGTTTCCACGACCCCC
TCATATTTTTTTTTGCCACCCCCACCCCCTCACACCTTCTGATACTCAGA
CGGGATATCAGTACCCCCCCATGATAGACCAATGGACGATGACGATAGGT
TCTGTAAGCCGCAAATAAGTCCAACCAACTCTGACAGTGGAGCGCTCACT
AAAAGATAGAAGATTTCTAATCCATACTCTCCATCCCTCAGAAAAAAATT
GGACGAACATTATAGTAACCATTTTGCATATTCTGTCCGAATTGACCGTA
CGCCGTCCATTAGAAGGGTGATTAACTCCCTCTTTTCTCTCACGCGCACT
ATCTTTACAGCGCGTATTTATTTATTGTATAGTGTTTTTCCAGTACATTC
ATCACCAATATCCCCTTTTTATTTATT
CTCTTTCTCCCCCCCCTTGGCCCCATTTTAGCGGNNNNNNCCCAANCNNN
NGACACTAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGAGTGTCTTCCTTGAGG
CCAGGTTCTATACTTCGAAAGTGACTATGAGGGAAAGAAAGTGTGGGGGT
GAGACAGGAGCCTACAGAGCCCATTCTCAAAGATCAGCTCTAAGGACTCT
GACGTGAAAATACTTGGGAAATTGTCAAGTAAACACGGTGGCAAGCTGGA
TAAATGCTCACTATGGATGTCAGTACCCAGAACCAAGTATCAGTGAACCC
ATAATTTGTAATTTCAAAACTCTTTTGTTTAAATTAAGAGAAAAAGCCAC
CAGTTCTTTCCTTGAGTCNTGTCCTGNGCATTTCACTTACTGTAAAATGC
TGTAGACTGTATCGAAGTGCCCCACAAAAAAAAGAAAACCCTGAGGGGGG
GGGGGAGACTGAAATGTTGGAAAATGAAGGAGGAAAGACAGGATTTCTTG
GTACACTCTATTTTTCTCCAGAAGGCACTTATATCAAATAGCGGATGATT
CTGATGTCTTGGCACATATTCATAGCCTCAGCAACTTAGGAGGCTATCCG
CTGAGAGTTGTTACGGCAGAGAGACCCCTGTCTTTAAACAATGTTATTTT
TTACGGGTCAAGCATAGTTGGCGGGCCTTAATGACCGGTACTAAATTGAA
TACTTCGTGAGGGGCCTCTGTCTTGTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no201_d12.g1 MSMg01no201_d12.g1 CHROMAT_FILE:
MSMg01no201_d12.g1 PHD_FILE: MSMg01no201_d12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:21:13 2005
         (237 letters)



>mm_chr6_125136588_125137224
          Length = 637

 Score =  451 bits (233), Expect = e-131
 Identities = 236/237 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagagtgtcttccttgaggccaggttctatacttcgaaagtgactatgagggaaagaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagagtgtcttccttgaggccaggttctatacttcgaaagtgactatgagggaaagaaag 260

                                                                       
Query: 61  tgtgggggtgagacaggagcctacagagcccattctcaaagatcagctctaaggactctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 261 tgtgggggtgagacaggagcctacagagcccattctcaaagatcagctctaaggactcta 320

                                                                       
Query: 121 acgtgaaaatacttgggaaattgtcaagtaaacacggtggcaagctggataaatgctcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acgtgaaaatacttgggaaattgtcaagtaaacacggtggcaagctggataaatgctcac 380

                                                                    
Query: 181 tatggatgtcagtacccagaaccaagtatcagtgaacccataatttgtaatttcaaa 237
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatggatgtcagtacccagaaccaagtatcagtgaacccataatttgtaatttcaaa 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)