Query= MSMg01no202_n14.b1 MSMg01no202_n14.b1 CHROMAT_FILE:
MSMg01no202_n14.b1 PHD_FILE: MSMg01no202_n14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:23:49 2005
(670 letters)
>mm_chr6_116959777_116960845
Length = 1069
Score = 1180 bits (610), Expect = 0.0
Identities = 652/668 (97%), Gaps = 5/668 (0%)
Strand = Plus / Plus
Query: 5 gaattccacaata--tcccgtgttgtggagtttattggacctggatttatgagactgggc 62
||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 205 gaattccacaatactt---gtgttgtggagtttattggagctggatttatgagactgggc 261
Query: 63 caaaccatattctgccacacttcttgaatgcttgagaatatgtaaattctcaaatactgc 122
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 caaaccatattctgtcacacttcttgaatgcttgagaatatgtaaattctcaaatactgc 321
Query: 123 atacaaatccaactgagttggttttagcttcaatacttttgaaatacttttatttccttg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 atacaaatccaactgagttggttttagcttcaatacttttgaaatacttttatttccttg 381
Query: 183 ctatgatgataatcaagagaaatattttgaaattagtgctatgttgatgatatttcctat 242
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct: 382 ctatgatgataatcaagagaagtattttgaagttagtgctatgttgatgatatttcctat 441
Query: 243 tccccaaattctataactttttgctttacatgttttgagaacattacggacatgtttaaa 302
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 442 tccccaaattctataactttttgctttacatgttttgagaacattgcggacatgtttaaa 501
Query: 303 atccttaaatcaccttggcattgatcatgtcatagaggagtggcaagcttgatgtctaac 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 atccttaaatcaccttggcattgatcatgtcatagaggagtggcaagcttgatgtctaac 561
Query: 363 aagaatctgtgatttcaagcccctttttctgaataagcattcttttactttgaggtttct 422
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 562 aagaatctgtgatttcaagcccctttttctgaataagcattcttttactttgagatttct 621
Query: 423 gagacctttttatactgtggaaaatgtgtcgcccaaaatgtaaatccttcctaaatacct 482
|||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct: 622 gagatctttttatactgtgggaaatgtgtcacccaaaatgtaaatccttcctaaatacct 681
Query: 483 aggaggatgaaattttaaagcaaagacttgacttcagcaagggtggagataaagtaacta 542
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 aggaagatgaaattttaaagcaaagacttgacttcagcaagggtggagataaagtaacta 741
Query: 543 aaggatagcaggaagtgaatgatatacgcagacgcaggagcagcctggtcccacaatgag 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 742 aaggatagcaggaagtgaatgatatacgcagacgcaggagcagcctggtcccacagtgag 801
Query: 603 caaaagcccttcctgatgtgtgtgtgcatcccttccagggagcccctgccagcaggagga 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 caaaagcccttcctgatgtgtgtgtgcatcccttccagggagcccctgccagcaggagga 861
Query: 663 agcagagc 670
||||||||
Sbjct: 862 agcagagc 869
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1069
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1059
Effective search space: 698940
Effective search space used: 698940
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no202_n14.g1 MSMg01no202_n14.g1 CHROMAT_FILE:
MSMg01no202_n14.g1 PHD_FILE: MSMg01no202_n14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:23:49 2005
(648 letters)
>mm_chr6_117013291_117014337
Length = 1047
Score = 1145 bits (592), Expect = 0.0
Identities = 634/648 (97%), Gaps = 1/648 (0%)
Strand = Plus / Minus
Query: 1 atctcattttaataagcaagatgtgggtgagcagaaagaggttagccctgcagagcatgt 60
|||||||||||||||||||||||||| |||||||||||||| || |||||||||||||
Sbjct: 847 atctcattttaataagcaagatgtggatgagcagaaagaggggaggtctgcagagcatgt 788
Query: 61 gcatgtctgtgtaggtgggcttctgactctacattctattgtgaaagtgggcactgccag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 gcatgtctgtgtaggtgggcttctgactctacattctattgtgaaagtgggcactgccag 728
Query: 121 gaccacactctgggtccctatgccatgtggaatgcaccggagaatgacagacacaaaccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 gaccacactctgggtccctatgccatgtggaatgcaccggagaatgacagacacaaaccc 668
Query: 181 tggttccactccggatcaatcacagcatattctctgcagcaggggagtaggcatggggac 240
|||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 667 tggttccactccagatcaatcacggcacattctctgcagcaggggagtaggcatggggac 608
Query: 241 ttctgtggagacattctatggcattctaaggtgtagctggcactgctctgggacatctct 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 ttttgtggagacattctatggcattctaaggtgtagctggcactgctctgggacatctct 548
Query: 301 gtataattcacagacgtggtaactcctgtacttaaatgcctcaaatgtgtctcatgttta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 gtataattcacagacgtggtaactcctgtacttaaatgcctcaaatgtgtctcatgttta 488
Query: 361 attaaactctagcctttcacaagccccatgggctttgagattctcagtgaagactattgt 420
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||
Sbjct: 487 attaaactctagcctttcacaagccccatgggctttgagactctcagtgaagactgt-gt 429
Query: 421 gtcctttctctccatctctaggctgtggcttctcctttccccaaaagactcttctacaag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gtcctttctctccatctctaggctgtggcttctcctttccccaaaagactcttctacaag 369
Query: 481 gatcagtccttggccaacgacacacttcctgagcctggctggctttattctccccaagcc 540
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 gatcagtccttggccaacaacacacttcctgagcctggctggctttattctccccaagcc 309
Query: 541 cagccattagggatggctttctaatatattccatctaaaccaaatggccatgagcctcct 600
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 308 cagccattagggatggctttctaatacattccatctaaaccaaatggccatgagcctcct 249
Query: 601 cactccctccttggcatttgccacacctcttgtattgtcctggttgtt 648
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 cactccctccttggcatttgccacacctcttgtattgtcctggttgtt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1047
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1037
Effective search space: 661606
Effective search space used: 661606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
