Query= MSMg01no204_l16.b1 MSMg01no204_l16.b1 CHROMAT_FILE:
MSMg01no204_l16.b1 PHD_FILE: MSMg01no204_l16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:26:23 2005
(506 letters)
>mm_chr6_6215878_6216783
Length = 906
Score = 781 bits (404), Expect = 0.0
Identities = 476/510 (93%), Gaps = 18/510 (3%)
Strand = Plus / Minus
Query: 5 gaattcaactttgtagcgtctacacccttcagcagcatggcttcttttcaggaactgttt 64
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 gaattcaactctgtagagtctacacccttcagcagcatggcttcttttcaggaactgttt 743
Query: 65 tgtccaggctagccacgcagtgagcacccagagacctgcctgtctcagtctccaggtgaa 124
||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 tgtccaggcaagctatgcagtgagcacccagagacctgcctgtctcagtctccaggt--- 686
Query: 125 gaaggggttgcaggcacacgcaactccacccagctgttgtaccagctggggatttgaact 184
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 685 gaaggggttgcaggcacacacagctccacccagctgttgtaccagctggggatttgaact 626
Query: 185 caggtcttcgtgtttgtacagcaatcacttttacccactgagctgtatccccagctgtca 244
|||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 625 caggtcttcgtgtttgtacagcaagcactcttacccactgagctgtatccccagctgtct 566
Query: 245 ctattgttgaagagcattattatcactcaagtaatgtcaaatgtaactgctctctccaca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctattgttgaagagcattattatcactcaagtaatgtcaaatgtaactgctctctccaca 506
Query: 305 atgtggggaaagacaaagagcagttgggaaagacatttggggaaagtggatgatggccag 364
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atgtggggaaagacaaagtgcagttgggaaagacatttggggaaagtggatgatggccag 446
Query: 365 gaaatcccccccc--------gaatagtagcaagaaatggtggataacgaggactggacg 416
||||| | ||||||||||||| |||||||||||||||||||||||||
Sbjct: 445 gaaat-------ctaaatagtgaatagtagcaagcaatggtggataacgaggactggacg 393
Query: 417 tgaccgtgaaatgctacaccatctggaggccgagagtccaaaaagagtaaagaagagcaa 476
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 392 tgaccatgaaatgctacaccatctggaggccgagagtccaaaaggagtaaagaagagcaa 333
Query: 477 tggtcatagtaaggccggaacgacagctga 506
|||||||||||||||| |||||||| ||||
Sbjct: 332 tggtcatagtaaggccagaacgacatctga 303
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space: 444416
Effective search space used: 444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no204_l16.g1 MSMg01no204_l16.g1 CHROMAT_FILE:
MSMg01no204_l16.g1 PHD_FILE: MSMg01no204_l16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:26:23 2005
(108 letters)
>mm_chr6_6177074_6177581
Length = 508
Score = 186 bits (96), Expect = 4e-52
Identities = 105/108 (97%)
Strand = Plus / Plus
Query: 1 ttcagtaaatttagcccttgttcgattttgctgttgtttttgttgtatttgccttgtttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 ttcagtaaatttagcccttgttcgattttgctgttgtttttgttgtatttgttttgtttt 260
Query: 61 aatggaggaacagtagcaggcaccgtagtattttctaagtctccatgg 108
|||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatggaggaagagtagcaggcaccgtagtattttctaagtctccatgg 308
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 108
Length of database: 508
Length adjustment: 8
Effective length of query: 100
Effective length of database: 500
Effective search space: 50000
Effective search space used: 50000
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)
|
