Query= MSMg01no204_m22.b1 MSMg01no204_m22.b1 CHROMAT_FILE:
MSMg01no204_m22.b1 PHD_FILE: MSMg01no204_m22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:26:29 2005
(522 letters)
>mm_chr6_46745240_46746161
Length = 922
Score = 938 bits (485), Expect = 0.0
Identities = 510/523 (97%), Gaps = 8/523 (1%)
Strand = Plus / Plus
Query: 8 gaattctgctcatctgccttcctatatgcagaaaatcttctggaagacacccctttcatt 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattctgctcatctgccttcctatatgcagaaaatcttctggaagacacccctttcatt 267
Query: 68 tctaaataccaagtgacctttatttaatagaaaacctagcatactgacttctcatttgat 127
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct: 268 tctaaataccaagtgacctttatttagtagaaaacctagcatactgacttctcatttgtt 327
Query: 128 tttgtccctgtcattctgaatatcaaaatgttgttacaattttactcttctgaagtaatg 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tttgtccctgtcattctgaatatcaaaatgttgttacaattttactcttctgaagtaatg 387
Query: 188 tattatttcccatgtacaagtcatttgcacccatatgaagtgagcctcatcttcctgaag 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tattatttcccatgtacaagtcatttgcacccatatgaagtgagcctcatcttcctgaag 447
Query: 248 caatatgattaattcatttaactatacaacattgattcccagctttccaaaattttaaga 307
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 448 caatatgattaattcatttaactattcaacattgattcccagctttccaaaattttaaga 507
Query: 308 tatagaaatgagagatactcttcttaaaagcaattttaaagacatggaaatgacagcata 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tatagaaatgagagatactcttcttaaaagcaattttaaagacatggaaatgacagcata 567
Query: 368 tcaaaccacccgcttctgagaaatcaaaaataaatgaatgaatgaatgaatgaatgaa-- 425
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tcaaaccacctgcttctgagaaatcaaaaataaatgaatgaatgaatgaatgaatgaatg 627
Query: 426 ------ataaaaataatgttaagagacagatgcccatatgtgtaaggtaagagaaactga 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 aatgaaataaaaataatgttaagagacagatgcccatatgtgtaaggtaagagaaactga 687
Query: 480 tgagtatctgggtttttttttcgtgtgtgtgtgtgtgtgtgtg 522
|||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 688 tgagtatctgggtttttttttcctgtgtgtgtgtgtgtgtgtg 730
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space: 466944
Effective search space used: 466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no204_m22.g1 MSMg01no204_m22.g1 CHROMAT_FILE:
MSMg01no204_m22.g1 PHD_FILE: MSMg01no204_m22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:26:29 2005
(587 letters)
>mm_chr6_46902870_46903861
Length = 992
Score = 982 bits (508), Expect = 0.0
Identities = 570/592 (96%), Gaps = 5/592 (0%)
Strand = Plus / Minus
Query: 1 aaataatttctaatttatttgcctagcattggtggggtgtaagaagaatctatagtttct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaataatttctaatttatttgcctagcattggtggggtgtaagaagaatctatagtttct 622
Query: 61 atctaataaacattacttctcccagtaagtgaatataggagtttcaggataaaaatccct 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atctaataaacattacttctctcagtaagtgaatataggagtttcaggataaaaatccct 562
Query: 121 tagagtgtcagagaattcagaggtt-aaaaagtcctttaaaaatatagtcaaatattcag 179
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 561 tagagtgtcagagaattcagaggttaaaaaagtcctttaaaaatatagtcaaatattcac 502
Query: 180 cagacaagcacctttccttgctgaactttcttgatggctcctaagtgcaccagttttggt 239
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagacaagcaccttcccttgctgaactttcttgatggctcctaagtgcaccagttttggt 442
Query: 240 gagctcaatgaacctctacaaatctgaagaacaacaaagaccaggatatcatatcaaatc 299
||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 441 gagctcaatgagcctctacaaatctgaagaacaacaaagaccaggatatcaaaccaaatc 382
Query: 300 aagccagggcatgaaggaagccacaatgatgtctatggtaaaaccccgcctgagtcaccc 359
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 381 aagccagggcatgaaggaagccacaatgatgtctatggtaaaaccctggctgagtcaccc 322
Query: 360 tcagagggaaaagaagacacagtagcatataaaggaaaac--tata--taaatgatttaa 415
|||||||||||||||||||||||||||| ||||||||||| |||| ||||| | | ||
Sbjct: 321 tcagagggaaaagaagacacagtagcatgtaaaggaaaacggtataaataaataaataaa 262
Query: 416 tcatggcagactagaactaagggcacatcttcagaatgagaaagcaaagtcaaaaggtac 475
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 tcatggcagactagaactaagggcacatcttcagaatgaggaagcaaagtcaaaaggtac 202
Query: 476 caatactgtcaatttcgaattctgaactcagtgaagatatctttcaaaagccattgtcca 535
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 caatactgtcaatttcaaattctgaattcagtgaagatatctttcaaaagccattgtctg 142
Query: 536 ttttgtctaaattttctgattcattgatcatgcttctaattgtcgttgcaag 587
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 ttttgtctaaattttctgattcattgatcatgcttctaattgtcgttgcaag 90
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 992
Length adjustment: 10
Effective length of query: 577
Effective length of database: 982
Effective search space: 566614
Effective search space used: 566614
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
