BAC Information

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BAC

Clone NameMSMg01-206H20
Chromosome6 (Build37)
Map Location 130,529,403 - 130,529,943
singlet/doubletsinglet
Overlap geneLOC667793
Upstream geneKlre1, Klrd1, Klrk1, Klrc3, Klrc2, Klrc1, LOC640755, Klri1, Klri2, Gm156, Klra17, Klra5, LOC667764, Klra6, LOC100038893, LOC100038894, LOC100038895, Klra4, LOC667769, LOC100038897, Klra8, EG654449, Klra9, Klra7, LOC100038898, Klra12, Klra10, Klra13, Klra3, Klra1, LOC100038902, LOC100038903, LOC625436, EG625473, LOC640779
Downstream geneEG667798, EG625558, LOC625566, EG636947, LOC625628, EG625648, LOC667830, EG434094, Klra2, LOC434095, 2010012C16Rik, Styk1, Csda, LOC625758, 5430401F13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-206H20.T7 (MSMg01no206_h20.b1)MSMg01-206H20.TJ (MSMg01no206_h20.g1)
ACCAG390082AG390083
length749725
length of high quality
(start - end)		317 (51 - 367)541 (129 - 669)
definitionCHROMAT_FILE: MSMg01no206_h20.b1 PHD_FILE: MSMg01no206_h20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:41 2005CHROMAT_FILE: MSMg01no206_h20.g1 PHD_FILE: MSMg01no206_h20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:41 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTCACATAGATTTCCATAGTTGATTTGCTAGTTTTCAATC
TTGCAAACTTGAATGTATTTATTCTTCTCCCTGCAGCATTTTTTAAATTG
GGTATTTATTTCATTTACATTCCCAATGCTATCCCAAAAGTTCCCCACAT
GCTCCCCCACCCACTCCCCTACCCACACACTCCCACTACTTGGCCCTGGC
ATTCCCCATATAAAGAATATAAAGTTTGCACGACCAATGGGCCTCTCTTC
CCACTGATGGCCAACTAGGCCATTCTCTGATTCATATGCAGCTAGAGACA
CGAGATCGGGGGTGGTGGAGTGCCCCGCCCCCCCCTTTTTNTTTTTTTTT
TTTTTTTTTTTTTTTTTCCCCCCAAAAAAAAAAAAAAATTTGGGGAGTGA
GTCTATCCACAACTATTTCACTTCATTACTTTTATATCCCCCCCCAAATT
TAAATCATACCCATCAATTACCCTTTTCTTTATTTTTCATCATTCCGATC
ACTAATTTTCTCCTTCAACTATTTCCCCATCTTTCTTCTTTTTTACCATA
TTCGCTCTCTACACATATAATCTTTCTATATTTCTTTTACTTTTCCCCCT
ACATCATTTTCTCCTTCCCCTCTTTCAATGCTCCTAAATCTTTCTGTTTT
ATCCTATTCCCCCTCCCCCCCAATTATTTCTATATAACATTCTTTTCCG

NCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTAGTGAACTTTTAGCACT
TTGTTCTGTGCAAAAGATTTGTTACATCCACTGCATTTGTAAGGCTTTTC
TTCTGTATGGATTCTGTAGTGAACTTTAAGCTCTGAGTTCTTTGTAAAAG
ATTTCCCACATTCATTACATTTGTAAGGTTTCTCTCCTGTGTGGATTCTG
TAGTGAATTTGAAGTTTTGAGTTCTTTGTAAAAGATTTGCCACATTCATT
ACATTTGTAAGGTTTCTCTCCTGTGTGGATTCTGTAGTGAACTTGAAGTT
TTGAGGACTGTGAAAATGATCTTCCACAGTTATGAGATTTATGAAGTCTT
TCTCCTGTACAGTTTTCATGCCCCAATTTGAGACTTGAGGAGCAGGTAAA
GAATTTTTCAAATTCATTACATTTGTAAGGTGTCTCTTGGGTAGGAGTTC
TATAATAAGCTTGAAGATTTGAGGACTCTATAAATGACTTACCATACTTA
TTACATTTATTTACTTTCTGTGCTTTCCTGAAATTTAACGATTCATTTGA
GACATCCCTGTATGTATCATAGAGGTATCTCTTGGACTCTCCATTAATCC
ATGGTCCAGTATACCAGCTCTGAATTGAAGATTCATTTAAAAAGGCATTC
TTATTTTCACTTATACAACGTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no206_h20.g1 MSMg01no206_h20.g1 CHROMAT_FILE:
MSMg01no206_h20.g1 PHD_FILE: MSMg01no206_h20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:28:41 2005
         (541 letters)



>mm_chr6_130529203_130530143
          Length = 941

 Score =  969 bits (501), Expect = 0.0
 Identities = 531/541 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cactgcatttgtaaggcttttcttctgtatggattctgtagtgaactttaagctctgagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cactgcatttgtaaggcttttcttctgtatggattctgtagtgaactttaagctctgagt 260

                                                                       
Query: 61  tctttgtaaaagatttcccacattcattacatttgtaaggtttctctcctgtgtggattc 120
           ||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 261 tctgtgtaaaagatttcccacatgcattacatttgtaaggtttctctcctttgtggattc 320

                                                                       
Query: 121 tgtagtgaatttgaagttttgagttctttgtaaaagatttgccacattcattacatttgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtagtgaatttgaagttttgagttctttgtaaaagatttgccacattcattacatttgt 380

                                                                       
Query: 181 aaggtttctctcctgtgtggattctgtagtgaacttgaagttttgaggactgtgaaaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaggtttctctcctgtgtggattctgtagtgaacttgaagttttgaggactgtgaaaatg 440

                                                                       
Query: 241 atcttccacagttatgagatttatgaagtctttctcctgtacagttttcatgccccaatt 300
           || |||| ||||||| |||||||||||||||||||||||||||||||||||| | || ||
Sbjct: 441 attttccgcagttattagatttatgaagtctttctcctgtacagttttcatggctcactt 500

                                                                       
Query: 301 tgagacttgaggagcaggtaaagaatttttcaaattcattacatttgtaaggtgtctctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgagacttgaggagcaggtaaagaatttttcaaattcattacatttgtaaggtgtctctt 560

                                                                       
Query: 361 gggtaggagttctataataagcttgaagatttgaggactctataaatgacttaccatact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gggtaggagttctataataagcttgaagatttgaggactctataaatgacttaccatact 620

                                                                       
Query: 421 tattacatttatttactttctgtgctttcctgaaatttaacgattcatttgagacatccc 480
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 621 tattacatttatttactttctgtgctttcttgaaatttaacgattcatttgagacatccc 680

                                                                       
Query: 481 tgtatgtatcatagaggtatctcttggactctccattaatccatggtccagtataccagc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgtatgtatcatagaggtatctcttggactctccattaatccatggtccagtataccagc 740

            
Query: 541 t 541
           |
Sbjct: 741 t 741



 Score =  107 bits (55), Expect = 3e-27
 Identities = 70/75 (93%), Gaps = 2/75 (2%)
 Strand = Plus / Plus

                                                                       
Query: 143 gttctttgtaaaagatttgccacattcattacatttgtaagg-tttctctcctgtgtgga 201
           ||||| ||||||| |||||||||||||||||||||||||||| ||| |||||||| ||||
Sbjct: 7   gttctgtgtaaaacatttgccacattcattacatttgtaaggcttt-tctcctgtatgga 65

                          
Query: 202 ttctgtagtgaactt 216
           |||||||||||||||
Sbjct: 66  ttctgtagtgaactt 80


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 2
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space:   494361
Effective search space used:   494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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