Query= MSMg01no212_b01.b1 MSMg01no212_b01.b1 CHROMAT_FILE:
MSMg01no212_b01.b1 PHD_FILE: MSMg01no212_b01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:37:43 2005
(194 letters)
>mm_chr6_54652562_54653155
Length = 594
Score = 340 bits (176), Expect = 2e-98
Identities = 185/188 (98%)
Strand = Plus / Plus
Query: 4 ggaattcctccccttaaaaataaaatcagccgcttaccaggggagctcaccttcaagagt 63
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 204 ggaattcctccccttaaaaataaaatcagccgcttgccaggggagctcgccttcaagagt 263
Query: 64 actggctcaaggggctgtgacagcagagtgtgggccatacctgctctctcctccactggt 123
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 264 actggctcaaggggctgtgacaacagagtgtgggccatacctgctctctcctccactggt 323
Query: 124 gctctggtgtcagtgaaactcaggtgggggctcttgtctctggaacaaaccttgagggag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gctctggtgtcagtgaaactcaggtgggggctcttgtctctggaacaaaccttgagggag 383
Query: 184 atgccatg 191
||||||||
Sbjct: 384 atgccatg 391
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space: 108996
Effective search space used: 108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no212_b01.g1 MSMg01no212_b01.g1 CHROMAT_FILE:
MSMg01no212_b01.g1 PHD_FILE: MSMg01no212_b01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:37:43 2005
(579 letters)
>mm_chr6_54682744_54683725
Length = 982
Score = 996 bits (515), Expect = 0.0
Identities = 562/583 (96%), Gaps = 11/583 (1%)
Strand = Plus / Minus
Query: 1 aacccgcagcaccaaaaaaaaaaaaatagcaacatcaatcataagtccgtattattatca 60
||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 aacccgcagcacc------aaaaaaatagcaacatcaatcataagtccgtattattatca 742
Query: 61 agacttcttccatagatctggaggccaaacctcatctagtacataggagatttgaaattt 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 741 agacttcttccatagatctggaggccaaacctcacctagtacataggagatttgaaattt 682
Query: 121 gaaatcaaggctttctggggccagatccaaagctatcaaacagtcaggtactccaattcc 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 681 gaaatcaaggctttctggggccagatccaaagctatcaaacaatcaggtactccaattcc 622
Query: 181 cctccactaccacctcccattctaacgtgggccagaacaggcaacctggggacaaggcca 240
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||
Sbjct: 621 cctccactaccacctcccattctaaagtgggccagaacaggcaacct-gggacaaggaca 563
Query: 241 aggctgttgtcacagtgtaggaggatccctgccaagaggaagagcagagctggaccctag 300
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 562 aggctgttgtcacagtgtaggaggatccctgccaagaggaagggcagagctggacccgag 503
Query: 301 gggcagcatgggctgtgttggtggggtaatttagcccagtctaatttgtgtcttccctaa 360
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 502 gggcagcatgggctctgttggtggggtaattcagcccagtctaatttgtgtcttccctaa 443
Query: 361 caaatggctgagacttcataaatagcatgcttttctgtggggaatacctgagtgagagga 420
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 442 caaatggctgagacttcataaatagcatgcttttctgtggggaatacctgagcgagagga 383
Query: 421 attgaggctggccgtgtgagattggtgagtaaaatttggccttcacgaaagaactgactg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 attgaggctggccgtgtgagattggtgagtaaaatttggccttcacgaaagaactgactg 323
Query: 481 tgtgcaattattgttgtattatgtacccctttcttcc----ttttttttttttttgagag 536
||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct: 322 tgtgcaattattgttgtattatgtacccctttcttccttttttttttttttttttgaaag 263
Query: 537 cactctttcattccacacattctatgtgccagcaatcatgaca 579
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 cactctttcattccacacattctatgtgccagcaatcatgaca 220
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 982
Length adjustment: 10
Effective length of query: 569
Effective length of database: 972
Effective search space: 553068
Effective search space used: 553068
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
