BAC Information

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BAC

Clone NameMSMg01-213M13
Chromosome6 (Build37)
Map Location 85,605,170 - 85,605,500
singlet/doubletsinglet
Overlap geneAlms1
Upstream geneExoc6b, LOC665129, Npm3-ps1, EG545861, EG623016, Spr, LOC665086, LOC665089, Emx1, Sfxn5, Rab11fip5, Noto, Smyd5, 1700040I03Rik, Cct7, Fbxo41, Egr4
Downstream geneLOC100043497, EG665134, LOC100043493, Cml3, LOC623273, Cml5, Cml4, LOC100043504, LOC100043508, Cml2, LOC665177, 1700019G17Rik, Cml1, Tprkb, EG434057, LOC665213, Dusp11, Figla, Add2, Tgfa, LOC665233, LOC100043094, LOC100043527, 2010309E21Rik, Snrpg, Pcyox1, Tia1, C87436, 2310040G24Rik, Pcbp1, Asprv1, Mxd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-213M13.T7 (MSMg01no213_m13.b1)MSMg01-213M13.TJ (MSMg01no213_m13.g1)
ACCAG394665AG394666
length734729
length of high quality
(start - end)
335 (33 - 367)289 (61 - 349)
definitionCHROMAT_FILE: MSMg01no213_m13.b1 PHD_FILE: MSMg01no213_m13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:54 2005CHROMAT_FILE: MSMg01no213_m13.g1 PHD_FILE: MSMg01no213_m13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCTTTTAC
GTAGTACTAGGCAAGCACTCAACCAACTGAGCTACATCTTCAGTCCCCCG
TTCAGAATTTCTTAAGCAAGTCACATGAAATATAGATCCAAGGGGATAAA
GTTATTAACATGAAAATCTTGGCATATAAAAGATATAAAATATTAAAAGA
CAAGACAGGGATTTAAAAAAAGATATTTTCAGCTTGTAAAAATCAATGTG
AAATGTTACAGGAATGCTCACACTGCTGCTTTTCAGTATAAACAAATACA
CAGAAAAAGTCATATGTTGATCAGTTGATGAATTGATGGATGAAGACAAG
AATATTGCATATATTAACCTCACATATTAATATGTCCAAATCTCTATCAG
ATATTGTGACAAGGCATATTCTTAAAGGTATATCCAGTGTAGAATATTTT
ATATAATAAATATTTAAGTTAACAATATAAATTATTAGTATAGATTAATA
GTAGTAGCATTTTTACATATTAAAGCTAAAGACTATTGAAATTAAGAACA
AATCCAGTACCAAAACAACTACTATATATAGTTCCATTTTTAAGCCGAGT
AATTAATACCTAATTAAGGCCCTAATATGAAAAAAGGTAGAAAGCTAGGA
GAAAAAATTTACGATCGAATTACTAGCATTAATGACCAATAATAAACCAG
ATGATTAAGTAATGCCAAGGTCTTATTCTTTGAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCTTATTTTTCCTAACAATTCTTTTGGTAGCTTTTCTTACA
TAGTGTGAGCTGTTAGTTCCTTGTGGTTTTGAACTGCATTTCTCTTCAAT
TAGTTGAGTGCATTACGTATTTTCTTGGGTCATGTCTATTTTCTTTGGAG
AACTATTTGTTTAACTCCTTGTACACTTTTAAGTCAGATTTGTTTTTTGT
TTTCAAGGCACACATGCTCCTTATAAATTCTATGTTTAACTCTCAGCAAG
TACTTTGGGAAGCCTTGCTTCAGTTTCACTTGTCCATGACCGCTTTTGCT
GTCATGCAAAGAAGCGATTACCAAATACAGTTTCTTGAAGCTTTTCTTTT
ATGTCTTCTACCAGTTTTTGGAATTCAGGTCTTGTGTTTATATCTCTAAT
TCTTCTTGATGTAAGTTTTATGTAATGATTTAACTTTATTCTCTTAATGT
GGTTATCCAGTTTTTCTATACTCTCAGTTGGAAAGCCTATCCTTTCCTCA
CTGCATAGCAGCTATATTCTTATTAAACACTGGTTTTATACATTCTATAT
GTGAATAGTTAATGGAAACTTTTCAGCAAACAGTGTGAGTAGAACTCTCT
CTTCTGCTCCTTCCTCTTACATGGAAATTCTTATTTTCTAACAGGTAAAA
TTTGACAGCTGAATAATAATGTTTTATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no213_m13.b1 MSMg01no213_m13.b1 CHROMAT_FILE:
MSMg01no213_m13.b1 PHD_FILE: MSMg01no213_m13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:54 2005
         (335 letters)



>mm_chr6_85604966_85605700
          Length = 735

 Score =  625 bits (323), Expect = 0.0
 Identities = 329/331 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcccttttacgtagtactaggcaagcactcaaccaactgagctacatcttcagtcc 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcccttttacgtggtactaggcaagcactcaaccaactgagctacatcttcagtcc 264

                                                                       
Query: 65  cccgttcagaatttcttaagcaagtcacatgaaatatagatccaaggggataaagttatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cccgttcagaatttcttaagcaagtcacatgaaatatagatccaaggggataaagttatt 324

                                                                       
Query: 125 aacatgaaaatcttggcatataaaagatataaaatattaaaagacaagacagggatttaa 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 325 aacatgaaaatcttggcatataaaagatataaaatattaaaagacaagacagagatttaa 384

                                                                       
Query: 185 aaaaagatattttcagcttgtaaaaatcaatgtgaaatgttacaggaatgctcacactgc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaaaagatattttcagcttgtaaaaatcaatgtgaaatgttacaggaatgctcacactgc 444

                                                                       
Query: 245 tgcttttcagtataaacaaatacacagaaaaagtcatatgttgatcagttgatgaattga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgcttttcagtataaacaaatacacagaaaaagtcatatgttgatcagttgatgaattga 504

                                          
Query: 305 tggatgaagacaagaatattgcatatattaa 335
           |||||||||||||||||||||||||||||||
Sbjct: 505 tggatgaagacaagaatattgcatatattaa 535


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 735
Length adjustment: 9
Effective length of query: 326
Effective length of database: 726
Effective search space:   236676
Effective search space used:   236676
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)