BAC Information

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BAC

Clone NameMSMg01-215J23
Chromosome6 (Build37)
Map Location 12,698,054 - 12,698,239
singlet/doubletsinglet
Overlap geneThsd7a
Upstream geneNdufa4, Phf14, LOC100040844, EG625347, LOC435879
Downstream geneLOC667735, LOC384350, Tmem106b, Gm467, Gm725, 1700016P04Rik, LOC100040478, Tmem168, B630005N14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-215J23.T7 (MSMg01no215_j23.b1)MSMg01-215J23.TJ (MSMg01no215_j23.g1)
ACCAG395807AG395808
length716724
length of high quality
(start - end)
237 (121 - 357)186 (132 - 317)
definitionCHROMAT_FILE: MSMg01no215_j23.b1 PHD_FILE: MSMg01no215_j23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:42:21 2005CHROMAT_FILE: MSMg01no215_j23.g1 PHD_FILE: MSMg01no215_j23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:42:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
CTTGTCTGGGTAAGACTGGCTATTGTCTCAAGTAAACACTCTGCAGACCC
CCTCCTTGAGCTATTCCGCCTCGTTCTTTGTAATGCCTAATTATTTTCAC
CATCTCTACTAGAAGTAAATTTGAATGTTACTGAATAGGTAAACTTCTTA
CTGCATTCCTACTGAATTCCAAGTTTGTTGGCTTCAAGGATTTTCTGGGA
TGTTGGAACACTGGCGAAGGCTTAGTTATGTCAGAATTCAATCTTAAAAG
GAACTTATAATAAAATACTAAAACAGAGCACATGGATCCATACACCAGAC
TAACTTTTGTTATTTTGCCCACCCCCGCCCTATGAGAACGCCAAAGTTCC
AGGAGGTGAGTTTCTCTGAAACTCATTGACTCGTGAGTGTTCCCAGGCCT
CTCTGCCTGCCAAGCAAACATCACTGGAGAGTGCATAGCAAAGCAACATT
CCTCTGTGGGTTTTTGTGGTTTTCTGTCCTCACTTCCCTGGATGATAGAC
TCTAACTCTTTCCTCTTCTTGTGGACTTTGGTCAGTGTTTTATCATAATG
ATTGAAAGAAACTAGAAATGTTTAATTTGTACTGTGTGAAAATTTCCTTA
CTAGACCAGACCCAGTTATTTCAACTGTAATGTTTGATTTTCCGATTTTA
AGATTTCTTCTTATTN
CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCGTCTTCCATAGTGGTTGGAGAGCAT
CCACCCACCCTCAGCAGATAGGGCCCCCTGTAGCTCTAAGGTTTTGTTGT
TTCCCTGTGTGTTCTGCTTCTACAGCGCTTTGCCGGGAGAGTCTGAGGAG
CAGTGAGTTGCTACTTTTCTTGTTTTGTCAAAAAAACAAAGCGAAAAGAC
TTCTTTCCCGGAAAGAAAAGTTTCTAAACCTCCATGTTAATCTCTCTACG
GCGTAAAAGATCACTTTTAATCACTCGTTACAAATTGCACTATCCAGTTT
TCCTTGTTAGATTNGCTTGTTTAGCCCCCCCCCTGCTGTCCCACACACCA
TCAAGCTATGCTTAATACATTTAAATCTCTCTCAAACATCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TTTGCCAAAACACCGCATTAAAAAAAAAAAAAAAAAAAAGAACTGTCTAC
CTGTATATTGCTAGAATGTCATTTTAGAAAGTCTAAGACTGGAAACCCAG
ATTTTAAAAGCACTTCACTTTGTAATGAAAGTACAGCGCTGCCCTCATTC
ACTGCTGAGCGGCTAGAGAAACATTCACCCTGTGACTCACTGTTGCCTCG
TAGTTATGTGTTCTTTTCCTATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no215_j23.g1 MSMg01no215_j23.g1 CHROMAT_FILE:
MSMg01no215_j23.g1 PHD_FILE: MSMg01no215_j23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:42:21 2005
         (186 letters)



>mm_chr6_12697854_12698439
          Length = 586

 Score =  344 bits (178), Expect = 2e-99
 Identities = 184/186 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agctctaaggttttgttgtttccctgtgtgttctgcttctacagcgctttgccgggagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agctctaaggttttgttgtttccctgtgtgttctgcttctacagcgctttgccgggagag 260

                                                                       
Query: 61  tctgaggagcagtgagttgctacttttcttgttttgtcaaaaaaacaaagcgaaaagact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctgaggagcagtgagttgctacttttcttgttttgtcaaaaaaacaaagcgaaaagact 320

                                                                       
Query: 121 tctttcccggaaagaaaagtttctaaacctccatgttaatctctctacggcgtaaaagat 180
           ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 321 tctttcccggaaagaaaagtttctaaacctccatgttaatcactccacggcgtaaaagat 380

                 
Query: 181 cacttt 186
           ||||||
Sbjct: 381 cacttt 386


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 186
Length of database: 586
Length adjustment: 8
Effective length of query: 178
Effective length of database: 578
Effective search space:   102884
Effective search space used:   102884
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)