BAC Information

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BAC

Clone NameMSMg01-216O20
Chromosome6 (Build37)
Map Location 106,148,464 - 106,148,701
singlet/doubletsinglet
Overlap geneCntn4
Upstream geneLOC100043716, LOC100043350
Downstream geneIl5ra, Trnt1, Crbn, Ppia-ps6_1128.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-216O20.T7 (MSMg01no216_o20.b1)MSMg01-216O20.TJ (MSMg01no216_o20.g1)
ACCAG396630AG396631
length716724
length of high quality
(start - end)		239 (127 - 365)538 (75 - 612)
definitionCHROMAT_FILE: MSMg01no216_o20.b1 PHD_FILE: MSMg01no216_o20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:44:08 2005CHROMAT_FILE: MSMg01no216_o20.g1 PHD_FILE: MSMg01no216_o20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:44:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTATGAAAATACAAATCAAATGTTGGAGCACACTGGCTTAGAAA
CCTCAGTTTAGATATAGCCTCAGGCTTCTACATTTGTAGGATCTGAAAAT
TTAAGTGTTAGAATTAATTTCTAGAAGTATTTGGTGCTCATAGATAGGAG
AGTGGTATCTTTGGGTATTTATCTCAATAATTTTCATGGAAACAGTAAAG
ATCAAAATTCCATACTGATTCATAATCAGTGAACAAAGTTTATATTTACA
TAAAATTAATAAATTCACTTTAATTTTTACAGATTTACTGAATTTAAGAT
AAAGTTTAAATAATTATTCTATTTGTATGCAATGGTGGCACAAACCTTTA
ATTCCAGCACTCAGGAGGCAGACAGGAAGGTGAATCTGAGTTCAAAGCCA
GCCTGGTCTATAGAGTGAATTTCAGGGCAGCCCAGGCTACACAAAGAAAC
CCTATTTTAAAAAATCTAAAGAAATAAATATACTAACAATTATGAATATA
ATTGATAACCTTTCCTTCTCTCATCATAAATATAATTGAGGAGAGAATGT
AATGAGAAAAGTACAGAAAATACAACATTTCTAGAACATCAACTTCAGAT
TAGTAGTTTTATCTCTACTGGACCCTACCTAGAGTCAATAGATAGGAAAC
TCATCTGAGAAAATGC

CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGCCCCATCTTT
TAATGGGGTTATTTGATTTTCTGGCGTCCACCCTCTTAAGTTCTTTATAT
ATATTGGATATTAGTCCTCTATCTGATTTAAGATAGGTAAAGGTCCTTTC
CCAATCTGTTGGTGGCCTTTTTGTCTTAATGATGGTGTCTTTTGCCTTGC
AGAAACTTTGCAGTTTCATGAGGTCTCATTTGTCAATCCTCGATCTTACA
GCACAAGCCATTGCTGTTCTATTCAGGAATTATTCCCCTGTGCCCATATC
CTCGAGGCTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTT
TTATGTGAAGTTCCTTGATCCACTCANATTTGACCTTAGTACAAGAAGAT
AGGAATGGATCAATTCGCATTCTTCTACAAGATAACAATCAGTTGTGCCA
GCTAACCAGTACCCCAGAGCTCTTGACTCTAGCTGCATATGTATCANAAG
ATGGCCTAGTCAGCCATCACTGGAAAGAGATGCCCATTGGACAGGCAAAC
TTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAAAATGGGAATGGG
TGGGTTAGGGAAGTTTTNCTNCCTNTNTTTTCCTTTTCTCTCCTCCTCTC
TCTCCCCTCTTTCTTCTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no216_o20.b1 MSMg01no216_o20.b1 CHROMAT_FILE:
MSMg01no216_o20.b1 PHD_FILE: MSMg01no216_o20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:44:08 2005
         (239 letters)



>mm_chr6_106148264_106148902
          Length = 639

 Score =  437 bits (226), Expect = e-127
 Identities = 235/238 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctacatttgtaggatctgaaaatttaagtgttagaattaatttctagaagtatttggtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tctacatttgtaggatctgaaaatttaagtgttagaattaatttctagaagtatttggtg 379

                                                                       
Query: 61  ctcatagataggagagtggtatctttgggtatttatctcaataattttcatggaaacagt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 378 ctcatagataggagagtggtatctttgggtatttatctcaataattttcatggaaacaat 319

                                                                       
Query: 121 aaagatcaaaattccatactgattcataatcagtgaacaaagtttatatttacataaaat 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct: 318 aaagatcaaaattccatactgactcataatcagtgaacaaagtttatatttacgtaaaat 259

                                                                     
Query: 181 taataaattcactttaatttttacagatttactgaatttaagataaagtttaaataat 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 taataaattcactttaatttttacagatttactgaatttaagataaagtttaaataat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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