BAC Information

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BAC

Clone NameMSMg01-217B05
Chromosome6 (Build37)
Map Location 41,239,276 - 41,239,564
singlet/doubletsinglet
Overlap genenone
Upstream geneAgk, E330009J07Rik, BC052883, Ssbp1, Tas2r137, Tas2r108, 1700016G05Rik, LOC669661, Olfr461, Olfr460, Clec5a, Tas2r138, Mgam, EG638904, Moxd2, LOC621968, BC048599, 1700074P13Rik, LOC194360, 1810009J06Rik, LOC100040208, 2210010C04Rik, LOC100039790, Tcrb-V8.2, LOC100040359, LOC100040333
Downstream geneTry4, 1810049H19Rik, Try10, Prss3, EG436523, EG386551, LOC100040233, Prss1, Prss2, Tcrb-V13, Ephb6, Trpv6, Trpv5, 1700034O15Rik, Kel, Olfr459, Pip, Sval2, Sval1, Sval3, Sva, Tas2r139, Tas2r144, Gstk1, Tmem139, Casp2, Clcn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-217B05.T7 (MSMg01no217_b05.b1)MSMg01-217B05.TJ (MSMg01no217_b05.g1)
ACCAG396726AG396727
length737732
length of high quality
(start - end)
312 (40 - 351)292 (73 - 364)
definitionCHROMAT_FILE: MSMg01no217_b05.b1 PHD_FILE: MSMg01no217_b05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:44:23 2005CHROMAT_FILE: MSMg01no217_b05.g1 PHD_FILE: MSMg01no217_b05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:44:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
AGACCCAGAAATGAAACCATACACCTATGGTCACTTGATCTTTGACAAGG
AAGCAAAAATCATCCAGTGGAAAAAAGACAGCATTTTCAACAAATGGTGC
TGGCACAACTGGCAGTTATCATGTAGAAAAATGCGAATTGATCCATTCCT
ATCTCCTTGTACTAAGGTCAAAGCTAAGTGGATCAAGGAGCTCCATATAA
AACCAGAGACAGTGAATCTTTTAGAGGAGAAAGTGGGGAAAAGCCTCAAA
GATATTGGCACAGGGGAAAAATTCCTGCATAGAAGAGCAATGGCTTGTGC
TGCAAGATTAAGTANCTTCCAANGGCANNTNCCACAATTGTAAAGCTTCT
ATAAGGCNNTNTNTATTCCCCCAAAAAAAACAAAAAGGCCACCATCATAT
TGGGAAAGGATCTTTACCTATTCTAAATCTAATAGGTGACTAATATCCAA
TATATATAACGAACTCCTGAAGGTGGACTCCTGAAAATCTTATAACTCCA
TTAAAAAATATGCGCTACAGTTAATCATTAACTCTCCTCCTGATGAATAC
CGAATCGTCTTGATACGCACCCTGAAAAAATGTTCCAGTATCCTCAATTA
CCCCAATAAATGCTAATTAAATATTACCTTGGACACTTTTTTCTCTCTAC
TATTTCAGCATGTCCTTTTATCTACCCCTTCGCGCGN
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAATAAATACAGAAGGTGAGTAGAGAAA
TAGTGTCCGCTGTATAGATTTGACCTTCCATCATTTCATTGTACGGCATG
GTTAATCTTTAATAATCAGATCATTTTAACTGCTAGTCTTTCTTTTATAA
TCACACCCAAATTATAAATGGTGCCAGATAATGAGTAAAAAATGGTAATA
ACATCCCCTCAATAGGAAACTTTCAAATTGTTGTTGAGTTCAAAGTGGGC
AACAGGAAAGGGGGTGTGAGGTCTTCTATTAGTCATACTTTTCACTGTGA
ATGAACACCTATTATATTTAAGCACCCCCCCCCCATCGAATCATTTATTT
TGGACTACAGATTTAAAATTCCGCCGCCACAGACTGTAACTCTGTTATTT
CTGCGTCGAGGATGGGTCTGGTGCTGTTCTTGCGAATCAATCCCCTAATG
AATAATGGAGCCAATCACTATGTGAGTAGGAGGTACTTCTAGGTCGAAAG
GAGGTATATATCAAGCAGGAGAGAGTTAGGTCCCTTTGTATGTTTGACTG
CCGTAGGACCCAATGTATCTATTATTGTCCCTGTCTTCCCATGATTGCAT
CTTTCCACCTATTTCCCATTTACTTTTGGATTTCACAACAAAACCATGAT
TCACTCCCCTTTTCTTTCTCCCCTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no217_b05.g1 MSMg01no217_b05.g1 CHROMAT_FILE:
MSMg01no217_b05.g1 PHD_FILE: MSMg01no217_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:44:23 2005
         (292 letters)



>mm_chr6_41239076_41239767
          Length = 692

 Score =  520 bits (269), Expect = e-152
 Identities = 284/289 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caataaatacagaaggtgagtagagaaatagtgtccgctgtatagatttgaccttccatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 201 caataaatacagaaggtgagtagagaaatagtgtccgctgtatagatctgagcttccatc 260

                                                                       
Query: 61  atttcattgtacggcatggttaatctttaataatcagatcattttaactgctagtctttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttcattgtacggcatggttaatctttaataatcagatcattttaactgctagtctttc 320

                                                                       
Query: 121 ttttataatcacacccaaattataaatggtgccagataatgagtaaaaaatggtaataac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttataatcacacccaaattataaatggtgccagataatgagtaaaaaatggtaataac 380

                                                                       
Query: 181 atcccctcaataggaaactttcaaattgttgttgagttcaaagtgggcaacaggaaaggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 381 atcccctcaataggaaactttcaaattgttgttgagttcaaagtgggcaacagaaaaggg 440

                                                            
Query: 241 ggtgtgaggtcttctattagtcatacttttcactgtgaatgaacaccta 289
           ||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtgtgagggcttgtattagtcatacttttcactgtgaatgaacaccta 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)