BAC Information

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BAC

Clone NameMSMg01-217G08
Chromosome6 (Build37)
Map Location 133,382,633 - 133,383,039
singlet/doubletsinglet
Overlap genenone
Upstream geneEG381818, Prh1, Prp2, A630073D07Rik, Tas2r120, Tas2r121, Tas2r122, Tas2r115, Tas2r124, Tas2r102, Tas2r136, Tas2r145-ps3, Tas2r117, Tas2r111-ps2, Tas2r123, Tas2r116, Tas2r110, Tas2r113, Tas2r142-ps5, Tas2r125, Tas2r146-ps1, Tas2r129, Tas2r131, Tas2r109, EG667992, LOC100043634, Tas2r140, LOC668002, Tas2r141-ps4, 2700089E24Rik, LOC630618, 5530400C23Rik
Downstream geneEG545884, EG626372, LOC100043649, LOC100043653, EG545886, LOC622962, Kap, LOC100043655, LOC100043656, LOC668063, Etv6, LOC100043660, Bcl2l14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-217G08.T7 (MSMg01no217_g08.b1)MSMg01-217G08.TJ (MSMg01no217_g08.g1)
ACCAG396935AG396936
length1,345718
length of high quality
(start - end)
422 (30 - 451)236 (126 - 361)
definitionCHROMAT_FILE: MSMg01no217_g08.b1 PHD_FILE: MSMg01no217_g08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:44:54 2005CHROMAT_FILE: MSMg01no217_g08.g1 PHD_FILE: MSMg01no217_g08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:44:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNGGTCAGTGTGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATT
CTATGAATCCTCTACCCTGTAGTTATCCAGGACTGGTCGAATTTTTTAGG
TAAGATGATTTTGAGTATATTCATCCACGTAGTTTATATGTCAGTGACAG
TTATGAGTGAAATGTAATAAATATAAAGACCTTTCCTCTGTTTTTGTCAA
GTCATAGTGTGAAAATTAACTAACTGGCAGCATATGGGCATGATATTATC
CCAGTCTCCATTTCAAATCTTTGCATTCAGATAGAACAGGGTGATATAAC
TTTGATGGTATAAGACTACATTGAACAAGGTACTTGTGCCCATGAGGAAT
ATAGCTTCATAGCTCCTTTTTAATCAGTGATTAGCCTATAAATTGGCATG
ATTTATAGAGTTACAGATGCACCCTCCTGTTGGTCCCATTTCTTCTGTGT
TTTTTTTTTCCCCCCCCCCCTCTNAAGTGTGGTTTATCTAAAAAAAAAGG
GGGGTTGATATTCATATCCATTGTCTCTAAGTAGTACCTCTAACTGCTGA
GATTTGGTCTGTTGCTATGTATGTAATGCTAAATTCTATAACTGAGGTTC
TGGGCCTACAAATGAGTTCTCATGTTTACATGGTTTTGTGAAAACCTTGT
TCCTTCATTTAAAAGTATTGTTTAAATAAAATTCACTACAGTCAATTACT
TGGAGGGATTAGAAGCAGGTGGGTTTTGAGTTATCTTTTTGAGGTAGAGA
AGATATAGTATATAGAGAGTCCAGTATGACATGGAGCTAAAGGTGAATGT
ATAAGGTTTTCACCCATGTATTACATGAATCTTGGTATCATGTCCATTTA
CTTTATCTGATTGTATTAAATACTACCTTATATGTCAAATATTTAATGTG
AATTATTGACTGGAAATTATATTTCTATTCTTCAAAGCCCTTATACTTTT
CTGTCCTTTTTAATTAATATGATCGTTTATATCTTCCATTCTTTAACTAT
ATGATTTCACCTTATTACATATTTCCCGTTTTTTATTTAATTTATTTAAC
CCATAATTATAACTCTATTATGATTACTCTATTTTTTCTATATTCTCCAA
TCCTATTTCTCATTATCTCTATAAATATTTGATTTCTACTCTATCTTTTT
TTTTTATTACTATTCTCAGCTATATAATAATTCTTTTTTCACTTCTCTGT
TTTTCTTATATCATTTTCATACTTATTCTCCTTCTATTTTTCTTCACTAT
TCTTCTTTTCCTATATACAGTTCTTATTACCTACTCTATTATGTGCATCT
CTATATTAATTGATTGAATATATCATATACTATTAATTATCACTA
CCATGATGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCACATAAAACCAGACACAATGAAACG
TATAGAGGAGAAAGTATGGAAAACTCTCGAAGATATGGGCACAGGAGAAA
AAATTCCTGAAGAACAGCAATGGCTTGTGCTGTAAGATCAAGAATCGACT
AATGAGACCTCATAAAATTGCAAAGCTTCTGTAAGGCAAAAGACACTGTC
AATAATACAAAAAGGCCACCAACAGATTGGGAAATGCAAATCATAACAAC
CATGATATTCCAACTCACACCTTTCTGAATGGCTAAGATGGAAAATTAAG
GTGACTGCAGATGTTTTTTTAGCACCCCCAGCAACCCCACCGCTCTATTG
CTGGTGGTATTGCAAGCTGGTACACACGACTTAGAAAATCATTCTGGCCA
TTTCTCAGAATATTGGACATAGTATGTAGTATTTTTATTCATATGAAATA
ATGACTTTTCTTGTGATGCATTCATACACACATATCATTGTTCTCTCTCT
CTCTCTGCATGAGTGCGCGCCTTTGTGTGTGTGTGTGTGCGTGTGTGTGA
TACAGACAGTGATAGAGAGTTATCGTCACTTTCTTTCTCCTTTTTTTCTT
CCACTTTTCTTTTTTCTCCCCTTTTTTTTTATTTCCCCTTTATCCCCCCC
TCCCCCCATTCTCTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no217_g08.b1 MSMg01no217_g08.b1 CHROMAT_FILE:
MSMg01no217_g08.b1 PHD_FILE: MSMg01no217_g08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:44:54 2005
         (422 letters)



>mm_chr6_133382418_133383239
          Length = 822

 Score =  748 bits (387), Expect = 0.0
 Identities = 402/407 (98%)
 Strand = Plus / Minus

                                                                       
Query: 16  ggaattctatgaatcctctaccctgtagttatccaggactggtcgaattttttaggtaag 75
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ggaattctatgaatcctctaccctgtagttatccaggactggtcgaattttttaggtaag 563

                                                                       
Query: 76  atgattttgagtatattcatccacgtagtttatatgtcagtgacagttatgagtgaaatg 135
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 562 atgattttgagtatattcatccaagtagtttatatgtcagtgacagttatgagtgaaatg 503

                                                                       
Query: 136 taataaatataaagacctttcctctgtttttgtcaagtcatagtgtgaaaattaactaac 195
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 taataaatataaagacctttcctctgtttttgtcaagtcatagtgtgaaaattaactaac 443

                                                                       
Query: 196 tggcagcatatgggcatgatattatcccagtctccatttcaaatctttgcattcagatag 255
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tggcagcacatgggcatgatattatcccagtctccatttcaaatctttgcattcagatag 383

                                                                       
Query: 256 aacagggtgatataactttgatggtataagactacattgaacaaggtacttgtgcccatg 315
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 382 aacagggtgatataactttgatggcataagactacattgaacaaggtacttgtgcccatg 323

                                                                       
Query: 316 aggaatatagcttcatagctcctttttaatcagtgattagcctataaattggcatgattt 375
           ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 322 aggaatatagcttcacagctccttttaaatcagtgattagcctataaattggcatgattt 263

                                                          
Query: 376 atagagttacagatgcaccctcctgttggtcccatttcttctgtgtt 422
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 atagagttacagatgcaccctcctgttggtcccatttcttctgtgtt 216


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space:   335769
Effective search space used:   335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)