BAC Information

Click to search

BAC

Clone NameMSMg01-218F16
Chromosome6 (Build37)
Map Location 108,257,644 - 108,257,935
singlet/doubletsinglet
Overlap geneItpr1
Upstream geneLrrn1, Setmar, Sumf1, LOC100043718
Downstream geneLOC677205, Bhlhb2, Arl8b, Edem1, EG627371, LOC639110
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-218F16.T7 (MSMg01no218_f16.b1)MSMg01-218F16.TJ (MSMg01no218_f16.g1)
ACCAG397554AG397555
length715778
length of high quality
(start - end)
305 (45 - 349)283 (74 - 356)
definitionCHROMAT_FILE: MSMg01no218_f16.b1 PHD_FILE: MSMg01no218_f16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:20 2005CHROMAT_FILE: MSMg01no218_f16.g1 PHD_FILE: MSMg01no218_f16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCCTCTGAAGAACAGACTGGGAGGAAGAAGCAGCTCATTATGAGAA
AAAAGGGTACCAGCCAGGTAAAGTGCTAGCTAATCAGTTAAGGAAGCCAA
AAGCGGCTGGCGAAGGCCAGTTTGCTGATTGGCCTCAGGGCAGTCGGCTT
CAAGGTCCGCCCTATGCGGAGTCCCCGCCCTGCGTAGTGCGTCAGCCCTG
CGCAGAGAGGCAGTGCGCAGAGAGGCAGTGCGCAGACTCATTCATTCCCA
GAGAGGAACAAAGGAAAATATTTTAGGCATTTCCAGTCTTTGAAGGAGCC
GAGGGTGTTTTGTTTTTTCGCCNNGGCAGAACCCGTACAGATTAAAGAAC
TTGCCGAGTCGGTCCGCCACCCCCCAAACAAAGCTAATTTTACCTTGGTG
CAGTTAGACAGGCTCGCCGGCATGGCACTAACTCCTGCCGACTGGCAAAC
GGTTGTAAAAGCCGCTCTCCCTAGTATGGGCAAATATATGGAATGGAGAG
CTCTTTGGTATGAAGCTGCACAAGCGCAAGTCCCGAGCAAACGCAGCTGC
TTTGACTCCAGAGCAGAGAAGATGGACTTTTGACTTGTTAACGGGTCAGG
GAGCTTATTCTGCTGATCAGACAAACTAACATTGGAGAGCTTTATGCCCT
GATTTCTTCCACGGC
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATCTGCCCAAACACCTGCCAGAGCAGG
CAAGCAGGCACGCAGGCACGCAGGCATGCACACACAATCGTGCAGGTGGG
TCACTCCAGTGTGCCTCCCCTGGCTTGGGTGGGTGGGTAATACATCCTGA
CAGCATGGAGCTCAGGGTAATTGTGGTATTGAACACGCGCAGTCTTCCCT
TCTACATCTCTCTCCCTCTACCCTAGCAAGCTGCCAGATGTCACTCCTTT
GCCAGACAATGAACTGCTGTTGATTTGGGAAAAGAGGGAAGTCATTTTGG
ACAGGTTTATTTTTAACACCACCCCCCGCCCCCCATGCTTTAAAAAAAGA
GGGGTGACCGGGGGTAGCCCCCCTCAAAAAAAAAAAAAAATCCGGGTGGG
TGGCGTTTTTCCTTTTTTTTTCTCCTTTTCTTTTTCATTCTTTTCACCTT
TTTTTCTTCTATCACCTTCATTCTTTCATTCCCCTTTTTTCTCTTTATCC
CCTCCTCCCACTTTTTCTTTTTCTTATTTTTCCCCTTTATCCTTTTTATT
ACATACCTAATCTCCACTTCTCTTTGCTCCTTCTCTTACTTTTTACCTTC
CACCCTCATTTTCCTACTCTTTCTCCTCTCTCTCTTCCTACCCCTTTTCT
TTCCCTTTTACCATCTTTCTCTCTTCTTCCTACCCTCCCTTTTCCCCTTC
CCCCCCTTTTTCTTTCCCTTTTTTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no218_f16.g1 MSMg01no218_f16.g1 CHROMAT_FILE:
MSMg01no218_f16.g1 PHD_FILE: MSMg01no218_f16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:21 2005
         (283 letters)



>mm_chr6_108257387_108258071
          Length = 685

 Score =  464 bits (240), Expect = e-135
 Identities = 275/292 (94%), Gaps = 10/292 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   atctgcccaaacacctgccagagcaggcaagcaggcac--------gcaggcacgcaggc 52
           ||||||||||||||||||||||||||||||||||||||        |||||||| |||||
Sbjct: 549 atctgcccaaacacctgccagagcaggcaagcaggcacgcaggcaagcaggcacacaggc 490

                                                                       
Query: 53  atgcacacacaatcgtgcaggtgggtcactccagtgtg--cctcccctggcttgggtggg 110
           | ||||||||||||||||||||||||||||||||||||  || |||||||||||||||||
Sbjct: 489 acgcacacacaatcgtgcaggtgggtcactccagtgtgccccccccctggcttgggtggg 430

                                                                       
Query: 111 tgggtaatacatcctgacagcatggagctcagggtaattgtggtattgaacacgcgcagt 170
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 429 tgggtaatacatcctgacagcatggagctcagggtaattgtggtattgaacacgtgcagt 370

                                                                       
Query: 171 cttcccttctacatctctctccctctaccctagcaagctgccagatgtcactcctttgcc 230
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 cttcccttctacatctctctccctctaccctagcaagctgccagatgtcactcctttgcc 310

                                                               
Query: 231 agacaatgaactgctgttgatttgggaaaagagggaagtcattttggacagg 282
           ||||| ||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 309 agacagtgaactgctggggatttgggaaaagagggaagtcattttggacagg 258


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 685
Length adjustment: 9
Effective length of query: 274
Effective length of database: 676
Effective search space:   185224
Effective search space used:   185224
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)