CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTACATTTCAGTAGACCAAAGCACAACTATGACAATTTTAGTCAAA
CAATAAATCATTATCACTCACTTCAAAACCTTTTCTTCTATAATTTGCAT
TATTATTCTGGGTAGCGGGTTCTGAAAATTGCATTTCTTATTAATAAGTG
TTGTATTATATTCTAAAACTAAATTAGAATATATTATATTCTATGATACC
AGGGAAGGACTGACAAGCATGACATAAAGGAAATAACTTGTTTCTCAAGC
TTACTCTCCTTTCCTCACCCTTAAGGCATGAACTTAAATTGGTACCAGTA
GCTATTGGTTACCATTTCCAGAACTTTCTGGCCTCTAGGGTGTCTCTGCA
TACGCAAACACATTGACACATTCAAAGGTCTGATTCCAGCTTTGAGGACC
CCCTTTCTAGTCTGTTAATGCGTCAGGCCACATTGCTCTCTTAATGCATT
TTTTTTCTAAGTAAATTTCATAATACTTACAGAAATGTTCCAGGTTGCAA
ACACATTTTTCATATTATGGTACCCACATAAATTAGGAAATACTCTAAAA
TAAATATATCCCTTCTTGGTAGCATATAATATGCATCTTAGTTACTGTGT
TACTGCTGTGAAGAGACTCATAAGCTAGGCAGCATGTAGAAGAAAGCATT
TAATTGGGGGGTTTA

CCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATGCCCAGACCTAAACACAGTAA
AAGCAAGATAGAGCAAACCAGTAGCCAACAGCAAACTGGATGGAGAGAAA
CATGGAGCAATCCCACTAAAATCAAAGACTAGACAAGGCTGCCTACTCTC
TATTAAACATAGTACTTGAAGGTCTAGCTAGAGCAGTTAGAGAACAAAAG
GAGGTCAAAGGGATACAAATTGGAAAGGAAGAAGTCACAATATCACTATT
TGTATTTGATATGATCATATACTTAAATGACCCCCAAAATTCCAACCAGA
GAACTCCTAAAGCTGATTTTTATTCCCGCCCCCCCCCTGGATATAAAATT
AACTCGAACATTTCAGTTGCCTTCCTCTACTCAAAGGATAAACAGGCTGA
GAGAGAAATTAGGGAAATGACACTCTTCACAATAGTCACACATAATATTA
CATGCCTTGGTGTGACTCTAGCCAAGCAAATGAAAGATATGTATGATAAG
AACTTCAAGCCTCTGAAGAAAAAAATCGATGTCGATCTCAGAGGATGGCC
TTGTCATGCTTTAATGGGATGAGAGTTCCTTGGTCCTATGAAGGCTCAAT
AGATGCCCCAGTGTAGGGGATTTGAGAGCAGGGAGATGGGAGTGGATTGG
TTGAGTGNNTTTCNTTTTTTTNT

Query= MSMg01no231_j20.b1 MSMg01no231_j20.b1 CHROMAT_FILE:
MSMg01no231_j20.b1 PHD_FILE: MSMg01no231_j20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:57 2005
         (670 letters)



>mm_chr6_45988549_45989618
          Length = 1070

 Score = 1288 bits (666), Expect = 0.0
 Identities = 666/666 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctacatttcagtagaccaaagcacaactatgacaattttagtcaaacaataaatc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 gaattctacatttcagtagaccaaagcacaactatgacaattttagtcaaacaataaatc 731

                                                                       
Query: 65  attatcactcacttcaaaaccttttcttctataatttgcattattattctgggtagcggg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 attatcactcacttcaaaaccttttcttctataatttgcattattattctgggtagcggg 671

                                                                       
Query: 125 ttctgaaaattgcatttcttattaataagtgttgtattatattctaaaactaaattagaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 ttctgaaaattgcatttcttattaataagtgttgtattatattctaaaactaaattagaa 611

                                                                       
Query: 185 tatattatattctatgataccagggaaggactgacaagcatgacataaaggaaataactt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 tatattatattctatgataccagggaaggactgacaagcatgacataaaggaaataactt 551

                                                                       
Query: 245 gtttctcaagcttactctcctttcctcacccttaaggcatgaacttaaattggtaccagt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 gtttctcaagcttactctcctttcctcacccttaaggcatgaacttaaattggtaccagt 491

                                                                       
Query: 305 agctattggttaccatttccagaactttctggcctctagggtgtctctgcatacgcaaac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 agctattggttaccatttccagaactttctggcctctagggtgtctctgcatacgcaaac 431

                                                                       
Query: 365 acattgacacattcaaaggtctgattccagctttgaggaccccctttctagtctgttaat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 acattgacacattcaaaggtctgattccagctttgaggaccccctttctagtctgttaat 371

                                                                       
Query: 425 gcgtcaggccacattgctctcttaatgcattttttttctaagtaaatttcataatactta 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 gcgtcaggccacattgctctcttaatgcattttttttctaagtaaatttcataatactta 311

                                                                       
Query: 485 cagaaatgttccaggttgcaaacacatttttcatattatggtacccacataaattaggaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 cagaaatgttccaggttgcaaacacatttttcatattatggtacccacataaattaggaa 251

                                                                       
Query: 545 atactctaaaataaatatatcccttcttggtagcatataatatgcatcttagttactgtg 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 atactctaaaataaatatatcccttcttggtagcatataatatgcatcttagttactgtg 191

                                                                       
Query: 605 ttactgctgtgaagagactcataagctaggcagcatgtagaagaaagcatttaattgggg 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttactgctgtgaagagactcataagctaggcagcatgtagaagaaagcatttaattgggg 131

                 
Query: 665 ggttta 670
           ||||||
Sbjct: 130 ggttta 125


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space:   699600
Effective search space used:   699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)