BAC Information

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BAC

Clone NameMSMg01-231M22
Chromosome6 (Build37)
Map Location 140,475,100 - 140,612,697
singlet/doubletdoublet
Overlap genePlekha5, Aebp2
Upstream geneLOC100043898, Pik3c2g, Plcz1, Capza3, LOC100042680, LOC100039020, LOC269810
Downstream geneEG664868, LOC664875, Pde3a, Slco1c1, Slco1b2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-231M22.T7 (MSMg01no231_m22.b1)MSMg01-231M22.TJ (MSMg01no231_m22.g1)
ACCAG398512AG398513
length727741
length of high quality
(start - end)		402 (324 - 725)665 (77 - 741)
definitionCHROMAT_FILE: MSMg01no231_m22.b1 PHD_FILE: MSMg01no231_m22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:10 2005CHROMAT_FILE: MSMg01no231_m22.g1 PHD_FILE: MSMg01no231_m22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(140,475,100 - 140,475,501)(140,612,111 - 140,612,697)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAAGATCCGCGGAATTCTTA
TACTTTTACCAAAAACAAAAAACTGAAGTTGTAAATTTTCCTGCAAGTAA
CAGAGAAATCGTTTAGACCGATGAAAACTGTAAAAATGGAGACAGTGTTA
AAGCCCCAGCCCTTAATAGTTCATGTTCTGTCTGTCTTCTTTCATGTTTA
GACCTCGCGGGCCTCCAAAAAGGTTCATAATTTTGGGAAAAGGTCCAATT
CAATTAAAAGGAACCCTAATGCACCTGTGGTCCGGCGTGGCTGGCTGTAT
AAGCAGGTAGGTCCTCNGTGCATATGCCTGGATGAGACGGCTCGAAGTCC
TCCGTCTGATAAGTTGATGACCGAGCATGTTTAGGGACTAGGGGTTTAGA
AAGCAGAAACTGAGAGGACACCCAACATCCAGTCTGTTGTTGTCTGCCTT
TTTCCTGTCCTCCCAGGAAGTCACACCACTTACCCAGCCTGCTCATTGGT
ACATCTCACAGATGCTAATACGTCTCAGTAGAGTCCCCAAGATATGTGGT
TACCCCATGTTCACTGAATTTAAGAGCACTTAAACCAAGTTCAGTAGCCC
ATGCTGGAGGCAGAGGCAAAGACCCACAAAGTTCAGGACCGCCCTGGGTT
CAACTCCAGCTCCAAACCCAGGGAGAGACTGCTTAACTACAGCAGTGGCT
TAGTGACCTTGCAGATTCCTTGTTTTG

ACATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTTTAAAAAGATGAAAAGGCAGA
AACAACCTATATATCCTACGATGTTTCTGTAGCCAAGGATGTGGAACCTT
AGGGTTTTCTGGGATTTTGATCCAGTTTAACTGTTGGGGTTTCGGCTGGA
GCCAGCCTCAGCAGTTGATGTGGTGGCCCAAGAGGAGATAAGGAGTCGGT
GAGGAAGGACCAAGGCAAAGTAGTCAGGGATCTTACAGCTCGGACTACGA
ATCAGGCTGCCTCTATGTATACAGCTTTCATAGAGCAAAGACAGACTAAT
GATTAGCCGAAAAGTACAGATTATACCATTTTGTCTCTGGACATGTGTTT
GTCTTTTCAGTACATGTTTGGGGTTACACATTCAGTCTCAATTAGAAAGT
ACAAGTAGAACAGATTTTATTTTTTATTATAAATCCTATAACACACAAGT
CTAAAGAATGTCTCTGCCAGAGCTGGAGTGATGGCTCAGTGGTTAAGAGC
ACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACACGG
TGGCTCACAACCGTCTGTAATGGGAGCAGATGCCTCTTCTGGTGTGTCTG
AAGACAATTACAGTGTACTCATATAAGTAAAATAAATAACAAATAAATCT
AAAATAAAAAAAGTCTCTGCTAAACAAACACATTATATGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no231_m22.b1 MSMg01no231_m22.b1 CHROMAT_FILE:
MSMg01no231_m22.b1 PHD_FILE: MSMg01no231_m22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:10 2005
         (402 letters)



>mm_chr6_140474900_140475701
          Length = 802

 Score =  762 bits (394), Expect = 0.0
 Identities = 400/402 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgcctggatgagacggctcgaagtcctccgtctgataagttgatgaccgagcatgttta 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 atgcctggatgagacggctcgaagtcctccgtctgagaagttgatgaccgagcatgttta 260

                                                                       
Query: 61  gggactaggggtttagaaagcagaaactgagaggacacccaacatccagtctgttgttgt 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 gggactaggggtttagaaagcagaaactgagaggacacccagcatccagtctgttgttgt 320

                                                                       
Query: 121 ctgcctttttcctgtcctcccaggaagtcacaccacttacccagcctgctcattggtaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgcctttttcctgtcctcccaggaagtcacaccacttacccagcctgctcattggtaca 380

                                                                       
Query: 181 tctcacagatgctaatacgtctcagtagagtccccaagatatgtggttaccccatgttca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctcacagatgctaatacgtctcagtagagtccccaagatatgtggttaccccatgttca 440

                                                                       
Query: 241 ctgaatttaagagcacttaaaccaagttcagtagcccatgctggaggcagaggcaaagac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgaatttaagagcacttaaaccaagttcagtagcccatgctggaggcagaggcaaagac 500

                                                                       
Query: 301 ccacaaagttcaggaccgccctgggttcaactccagctccaaacccagggagagactgct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccacaaagttcaggaccgccctgggttcaactccagctccaaacccagggagagactgct 560

                                                     
Query: 361 taactacagcagtggcttagtgaccttgcagattccttgttt 402
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taactacagcagtggcttagtgaccttgcagattccttgttt 602


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 802
Length adjustment: 9
Effective length of query: 393
Effective length of database: 793
Effective search space:   311649
Effective search space used:   311649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no231_m22.g1 MSMg01no231_m22.g1 CHROMAT_FILE:
MSMg01no231_m22.g1 PHD_FILE: MSMg01no231_m22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:10 2005
         (665 letters)



>mm_chr6_140612111_140613175
          Length = 1065

 Score = 1135 bits (587), Expect = 0.0
 Identities = 587/587 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttttaaaaagatgaaaaggcagaaacaacctatatatcctacgatgtttctgtagccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 tttttaaaaagatgaaaaggcagaaacaacctatatatcctacgatgtttctgtagccaa 528

                                                                       
Query: 61  ggatgtggaaccttagggttttctgggattttgatccagtttaactgttggggtttcggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 ggatgtggaaccttagggttttctgggattttgatccagtttaactgttggggtttcggc 468

                                                                       
Query: 121 tggagccagcctcagcagttgatgtggtggcccaagaggagataaggagtcggtgaggaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 tggagccagcctcagcagttgatgtggtggcccaagaggagataaggagtcggtgaggaa 408

                                                                       
Query: 181 ggaccaaggcaaagtagtcagggatcttacagctcggactacgaatcaggctgcctctat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 ggaccaaggcaaagtagtcagggatcttacagctcggactacgaatcaggctgcctctat 348

                                                                       
Query: 241 gtatacagctttcatagagcaaagacagactaatgattagccgaaaagtacagattatac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 gtatacagctttcatagagcaaagacagactaatgattagccgaaaagtacagattatac 288

                                                                       
Query: 301 cattttgtctctggacatgtgtttgtcttttcagtacatgtttggggttacacattcagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 cattttgtctctggacatgtgtttgtcttttcagtacatgtttggggttacacattcagt 228

                                                                       
Query: 361 ctcaattagaaagtacaagtagaacagattttattttttattataaatcctataacacac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 ctcaattagaaagtacaagtagaacagattttattttttattataaatcctataacacac 168

                                                                       
Query: 421 aagtctaaagaatgtctctgccagagctggagtgatggctcagtggttaagagcactgac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 aagtctaaagaatgtctctgccagagctggagtgatggctcagtggttaagagcactgac 108

                                                                       
Query: 481 tgctcttccagaggtcctgagttcaattcccagcaaccacacggtggctcacaaccgtct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 tgctcttccagaggtcctgagttcaattcccagcaaccacacggtggctcacaaccgtct 48

                                                          
Query: 541 gtaatgggagcagatgcctcttctggtgtgtctgaagacaattacag 587
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47  gtaatgggagcagatgcctcttctggtgtgtctgaagacaattacag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space:   691025
Effective search space used:   691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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