BAC Information

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BAC

Clone NameMSMg01-232E11
Chromosome6 (Build37)
Map Location 10,365,472 - 10,365,749
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC330264
Downstream geneLOC100040285, LOC667650, AA545190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232E11.T7 (MSMg01no232_e11.b1)MSMg01-232E11.TJ (MSMg01no232_e11.g1)
ACCAG398836AG398837
length734735
length of high quality
(start - end)
631 (46 - 676)280 (77 - 356)
definitionCHROMAT_FILE: MSMg01no232_e11.b1 PHD_FILE: MSMg01no232_e11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:44 2005CHROMAT_FILE: MSMg01no232_e11.g1 PHD_FILE: MSMg01no232_e11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGCTTGGCAGGCCGAGAGGCAAAGAGTTTCAAGGAAACTCAGCCT
CCTGGAACCTTGGCATTCTCACTAACCCGTATACTCATACCCTATCCCTG
CATTAGTCTTGTGTATGGATCCACGTGCTCTCTTTTAGTATTATTTTATT
ATAAGTGACTTTTAAGATTGAATTCTGACATAGGTAAGCATCCACCAGTG
TTCCAATGTCCTAGAAAATGCTTGAAGGCGATGAGATTGGAATTCAGTAT
GAATTCAGTAAGAATGTTACCTATTCAGTAACATTCAAATTTACTTCTAG
TAGAGAGGGTGAAACTAATTAGGCATTACAAAGAACAGAGCTAGAATAGT
TCAGGGCTAGCCTGCAGAGTGATTACTCAAGGCAGTAGCCAGTCTCACCC
AAAGGAATACCCAATGGCCTAGCTAATAGGTGGGTTTGCCATGAAAGAGT
TAGGGAATCCCACTGAGACAGGAATCTTCACTAAAGCCAGGTATAATAGA
CTACATTGCATATTAGAAGCAAGTTGGTGAATTCTGAAAAATGGAGATTC
TCCACAGATACTTAAAAGAAGAGCCAAGTTACATTCATACAAGAATTTAT
CAAGGCCTAGGACATAGGGGGGTTGTGGCACTGTATTATCCTTGATAACC
TCCGTTTTCCCTTATTCACTGTTCCGTACTTTCC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTATATTGGGTATTCTGAACTTTGG
GGGTAATATTCACTTCTCTGCCAGTACATACCATGTGTGTTTTTTGTGAC
TGAGTTATCTCACTCAGGATGATATTTTCAAGTGCTATCCATTTGCCTGC
AAATGGAAGTGTGCAAAGCACCTTAACTATGAGATTTGGGGCTCAATAAA
GAGGCTCTCAGGTTGGTTGTAGCTAGTTTCTTCTATGACCCGCTTCTGAG
ATGTGTGGTATTGTCATTTTTATTGTCTTTCCTCCAATTTCCAGAAGATA
ACTATTGACTANCTCTAAACCTATTCCTCCGGGTATCTTGGCCTCCCTGA
CTAACAACACCCACCAAAGAAAAAAAAATTTGACACTGTACATTCCTGAG
ATGGTATATATTTATTGGTATAGCATTATTATCACTAATGATTTACCTTT
GTTGAAATATAAATTTATATTTTTTGATGCAAACAACTTTTGGAATGCTT
ATTTTAAATGTAAAACATACTTCACAGATTCATTGTTTACAGCTGTCAGG
TGAAGCTACCTAGAGGCATATCTTGAAAACTATGACCCAACCCAGCTTGT
ATTCTATTCTTTTTCCATCCTTTGCCCTGAGGTGTAAGCTATCTAACCTG
TATATCTTCTATTGTATGGAATTCACTAAACATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_e11.g1 MSMg01no232_e11.g1 CHROMAT_FILE:
MSMg01no232_e11.g1 PHD_FILE: MSMg01no232_e11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:44 2005
         (280 letters)



>mm_chr6_10365272_10365951
          Length = 680

 Score =  484 bits (250), Expect = e-141
 Identities = 271/282 (96%), Gaps = 8/282 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatattgggtattctgaactttgggggtaatattcacttctctgccagtacataccatgt 60
           ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 201 tatattgggtattctgaactttgggggtaatattcacttctctgtgagtacataccatgt 260

                                                                       
Query: 61  gtgttttttgtgactgagttatctcactcaggatgatattttcaagtgctatccatttgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgttttttgtgactgagttatctcactcaggatgatattttcaagtgctatccatttgc 320

                                                                       
Query: 121 ctgcaaatggaagtgtgcaaagcaccttaactatgagatttggggctcaataaagaggct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgcaaatggaagtgtgcaaagcaccttaactatgagatttggggctcaataaagaggct 380

                                                                       
Query: 181 ctcaggttggttgtagctagtttcttctatgacccgcttctgagatgtgtggtattgtca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcaggttggttgtagctagtttcttctatgacccgcttctgagatgtgtggtattgtca 440

                                                     
Query: 241 ----tttttattgtctttcctccaatttccagaagataacta 278
               |    | |||||||||||||||||||||||||||||||
Sbjct: 441 gaaat----agtgtctttcctccaatttccagaagataacta 478


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)