Query= MSMg01no232_k15.b1 MSMg01no232_k15.b1 CHROMAT_FILE:
MSMg01no232_k15.b1 PHD_FILE: MSMg01no232_k15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:12 2005
(313 letters)
>mm_chr6_129218723_129219434
Length = 712
Score = 590 bits (305), Expect = e-173
Identities = 308/309 (99%), Gaps = 1/309 (0%)
Strand = Plus / Minus
Query: 5 gaattccctgcttcaattccatttcccagttttcatccctatagggacaaagggcaatag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 gaattccctgcttcaattccatttcccagttttcatccctatagggacaaagggcaatag 453
Query: 65 tttagtgcctaataataagtatctgaatctatggaaaattcacacatacccccagcaata 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 tttagtgcctaataataagtatctgaatctatggaaaattcacacatacccccagcaata 393
Query: 125 aagacactgtcactacctattactaagtcagacttcacgttttgaggaacattctataag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 aagacactgtcactacctattactaagtcagacttcacgttttgaggaacattctataag 333
Query: 185 tttagtgttgatctttacactatgtaaactctgagttgaataaatttctcactctcttaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tttagtgttgatctttacactatgtaaactctgagttgaataaatttctcactctcttaa 273
Query: 245 catttctataatgtctgatacaattatcagtattaaaaaatctatatttctgaattagtc 304
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 272 catttctataatgtctgatacaattatcagtatt-aaaaatctatatttctgaattagtc 214
Query: 305 acagagtta 313
|||||||||
Sbjct: 213 acagagtta 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 712
Length adjustment: 9
Effective length of query: 304
Effective length of database: 703
Effective search space: 213712
Effective search space used: 213712
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no232_k15.g1 MSMg01no232_k15.g1 CHROMAT_FILE:
MSMg01no232_k15.g1 PHD_FILE: MSMg01no232_k15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:12 2005
(277 letters)
>mm_chr6_129070268_129070944
Length = 677
Score = 397 bits (205), Expect = e-115
Identities = 244/277 (88%), Gaps = 32/277 (11%)
Strand = Plus / Plus
Query: 1 catctgagtgtgttctcagctgactctaagtcactaacccccaacacacacacacacaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 catctgagtgtgttctcagctgactctaagtcactaacccccaacacacacacacacaca 292
Query: 61 cacacacacacacacacacacacacacacacacacacacacacaatgcacatgcatccag 120
|||||||||||| || ||||||||||||||
Sbjct: 293 cacacacacaca-------------------------------aa-gcacatgcatccag 320
Query: 121 aacctaaaaaaataagttataattgtgccaaaacaacaaagataactataaggctccagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 aacctaaaaaaataagttataattgtgccaaaacaacaaagataactataaggatccagt 380
Query: 181 gttggtttattaagtgtctattaaactccagtggcactaagctgtcttccttggaggggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttggtttattaagtgtctattaaactccagtggcactaagctgtcttccttggaggggt 440
Query: 241 gcactagtactcattctgaagatgaggattcaggtgg 277
|||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcactagtactcattctgaagatgaggattcaggtgg 477
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space: 179024
Effective search space used: 179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
