BAC Information

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BAC

Clone NameMSMg01-233I19
Chromosome6 (Build37)
Map Location 37,489,027 - 37,547,603
singlet/doubletdoublet
Overlap geneAkr1d1, LOC665046
Upstream geneEG620863, LOC100039370, Ptn, LOC100039514, Dgki, EG665024, Creb3l2
Downstream geneYbx1-ps2, LOC100039636, LOC665102, Trim24, Svopl, Atp6v0a4, LOC100039657, D630002J15Rik, D630045J12Rik, LOC665125, Zc3hav1l, Zc3hav1, Rpl30-ps1, Ttc26, D130059P03Rik, 3110054G05Rik, 1110001J03Rik, LOC621228, Luc7l2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-233I19.T7 (MSMg01no233_i19.b1)MSMg01-233I19.TJ (MSMg01no233_i19.g1)
ACCAG399718AG399719
length758739
length of high quality
(start - end)		713 (46 - 758)286 (374 - 659)
definitionCHROMAT_FILE: MSMg01no233_i19.b1 PHD_FILE: MSMg01no233_i19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:16 2005CHROMAT_FILE: MSMg01no233_i19.g1 PHD_FILE: MSMg01no233_i19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,489,027 - 37,489,736)(37,547,318 - 37,547,603)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGGCAAGGTAATGAAGTCATGTGCCAAATGCATTGGACAAATGGA
GCTACCTGGAGACTCCCACAAAGGGAAGGTTGTATTAACTAAAGATACTA
ACTATATCTAGAGGGCAAGAGGCCCTTGTGCACACAGATTAGCACTGGAG
AAGCCAGGAAAAACGAAACATGCAGGCTCATCTCATCAAAGGAAAAATAT
GTCTACCCGTCTTCCTCCCAGAATGCTGGGAAGACTGTGGTTCACAGCCT
AGTGACCCTTCACTGTCTGTAGAGCCAGGCTTCAGATGTAGCCTCCAGGA
TTTATGCTTTGTTTATCCCAGACCCTTTCCCCCCACGCTTGAATGTTGTT
TCAAGTCTATTTATTAAGCCCCTCCTTATGAGAGACGTCACGTCACTCCT
ATTTTACAGTAGCCTAAGTGATGTCTATGATATCTTAGGCCAGGCCAACT
CTGGCACTGATCTTATGCTTACCTGAGTCAGTCATTCTCCCAAGGCCCTA
AGCCTGGAGCAACTGTTTCTGAGTCAACAGAACCTATCTTTAAGGACGAG
CCTCAAAGCAAACATGTCTTACGTTTTTTTTACACTTGAGACTGAGTTAA
TTATTATCAGTGATAATTATTATAACACCAAACTTCCCCCACCCCCCAAA
CCATCGGTGTGCTTAAATATGGCTAANACAAACCAATTTGGTGTCAGAAG
CCAAGAAG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTGCCGAAAAAATTACAGGAAGATGCGGTTGATAAGTTGG
ATAGTAAAGACTAAAGTATTGCCAGGGAGAGGCTTTACCAAGAAGTGAAA
AAGTCACAGTGGCAGTTAAGAACCCACAGGCTGCTCTGGGTGGAATGTTG
TAAATCCAGAGCCAAAGTGACCTTGATCTGTCTTTATTGCCCTTAAAGTC
ATTGTTTACCAACCTTGGCCACTGACTTAAGATTCTCAGGACTGCTTGCC
TCCAGCAGCATTAAAGCTTTGACTCNATTACTGCTAGCACCCAGAGCTTA
TAAAAACAAACAAACAAACAAACAAACAAACAAACACCTCAGTACCTTGC
TGCAGCCCACCACCAAAAGTGCATTTTGTAAACACACTGACTTATGCCTT
TCTTTTCTGTGATGAGAAAAGTTCATGGGACTTTGCCATGGTGGAAAATG
TCATTCAAGGTAACTTGACTCCCTGTTTCCAGGCCATGACCTATCGCATT
TGGCTCCGAATAAATGACTTTCTTATTTCCCTAAAGTGGAGTTTTATTTT
ATGTTGATGTTAGGTAAACGTGGAACTGAGGCAAAGGAAATATTTGGTTA
AAGTGGGTAGTATTCTTATCTGGATCATTCCAGTTGAAGGTCTCCAGTTA
GAGGTTAGTTGGCAGTTTCTGATTGGCTAAGCTTAAGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no233_i19.b1 MSMg01no233_i19.b1 CHROMAT_FILE:
MSMg01no233_i19.b1 PHD_FILE: MSMg01no233_i19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:16 2005
         (713 letters)



>mm_chr6_37488824_37489936
          Length = 1113

 Score = 1344 bits (695), Expect = 0.0
 Identities = 706/710 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaggcaaggtaatgaagtcatgtgccaaatgcattggacaaatggagctacctg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaggcaaggtaatgaagtcatgtgccaaatgcattggacaaatggagctacctg 263

                                                                       
Query: 64  gagactcccacaaagggaaggttgtattaactaaagatactaactatatctagagggcaa 123
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gagactcccgcaaagggaaggttgtattaactaaagatactaactatatctagagggcaa 323

                                                                       
Query: 124 gaggcccttgtgcacacagattagcactggagaagccaggaaaaacgaaacatgcaggct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gaggcccttgtgcacacagattagcactggagaagccaggaaaaacgaaacatgcaggct 383

                                                                       
Query: 184 catctcatcaaaggaaaaatatgtctacccgtcttcctcccagaatgctgggaagactgt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 catctcatcaaaggaaaaatatgtctacccgtcttcctcccagaatgctgggaagactgt 443

                                                                       
Query: 244 ggttcacagcctagtgacccttcactgtctgtagagccaggcttcagatgtagcctccag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ggttcacagcctagtgacccttcactgtctgtagagccaggcttcagatgtagcctccag 503

                                                                       
Query: 304 gatttatgctttgtttatcccagaccctttccccccacgcttgaatgttgtttcaagtct 363
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 504 gatttatgctttgtttatcccagaccctttcccccaacgcttgaatgttgtttcaagtct 563

                                                                       
Query: 364 atttattaagcccctccttatgagagacgtcacgtcactcctattttacagtagcctaag 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 564 atttattaagcccctccttatgagagacgtcacgtcactcctattttacagcagcctaag 623

                                                                       
Query: 424 tgatgtctatgatatcttaggccaggccaactctggcactgatcttatgcttacctgagt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tgatgtctatgatatcttaggccaggccaactctggcactgatcttatgcttacctgagt 683

                                                                       
Query: 484 cagtcattctcccaaggccctaagcctggagcaactgtttctgagtcaacagaacctatc 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 cagtcattctcccaaggccctaagcctggagcaactgtttctgagtcaacagaacctatc 743

                                                                       
Query: 544 tttaaggacgagcctcaaagcaaacatgtcttacgttttttttacacttgagactgagtt 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tttaaggacgagcctcaaagcaaacatgtcttacgttttttttacacttgagactgagtt 803

                                                                       
Query: 604 aattattatcagtgataattattataacaccaaacttcccccaccccccaaaccatcggt 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 aattattatcagtgataattattataacaccaaacttcccccaccccccaaaccatcggt 863

                                                             
Query: 664 gtgcttaaatatggctaanacaaaccaatttggtgtcagaagccaagaag 713
           |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 864 gtgcttaaatatggctaaaacaaaccaatttggtgtcagaagccaagaag 913


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 713
Length of database: 1113
Length adjustment: 10
Effective length of query: 703
Effective length of database: 1103
Effective search space:   775409
Effective search space used:   775409
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no233_i19.g1 MSMg01no233_i19.g1 CHROMAT_FILE:
MSMg01no233_i19.g1 PHD_FILE: MSMg01no233_i19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:16 2005
         (286 letters)



>mm_chr6_37547118_37547803
          Length = 686

 Score =  545 bits (282), Expect = e-160
 Identities = 285/286 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaacaaacaaacacctcagtaccttgctgcagcccaccaccaaaagtgcattttgtaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 aaacaaacaaacacctcagtaccttgctgcagcccaccaccaaaagtgcattttgtaaac 427

                                                                       
Query: 61  acactgacttatgcctttcttttctgtgatgagaaaagttcatgggactttgccatggtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 acactgacttatgcctttcttttctgtgatgagaaaagttcatgggactttgccatggtg 367

                                                                       
Query: 121 gaaaatgtcattcaaggtaacttgactccctgtttccaggccatgacctatcgcatttgg 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 366 gaaaatgtcattcaaggtaacttgactccctgtttccaggccatgacctatcacatttgg 307

                                                                       
Query: 181 ctccgaataaatgactttcttatttccctaaagtggagttttattttatgttgatgttag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ctccgaataaatgactttcttatttccctaaagtggagttttattttatgttgatgttag 247

                                                         
Query: 241 gtaaacgtggaactgaggcaaaggaaatatttggttaaagtgggta 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 gtaaacgtggaactgaggcaaaggaaatatttggttaaagtgggta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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