BAC Information

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BAC

Clone NameMSMg01-234I23
Chromosome6 (Build37)
Map Location 105,520,361 - 105,520,798
singlet/doubletsinglet
Overlap geneLOC100043350
Upstream geneCntn6, LOC384470, LOC100043716
Downstream geneCntn4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-234I23.T7 (MSMg01no234_i23.b1)MSMg01-234I23.TJ (MSMg01no234_i23.g1)
ACCAG400414AG400415
length747749
length of high quality
(start - end)
434 (137 - 570)293 (77 - 369)
definitionCHROMAT_FILE: MSMg01no234_i23.b1 PHD_FILE: MSMg01no234_i23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:51:34 2005CHROMAT_FILE: MSMg01no234_i23.g1 PHD_FILE: MSMg01no234_i23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:51:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACAGAATCCGCGG
AATTCACCTCTCTTCTGCCCTGATGAGAAACAACTGCCTCAAAAGGGCCC
AACTTTTAAAGGCTTTCTTTGTTGTTGCTGCTTTGTGAAGTACGAATACC
TGTGCTCATACACACACACACACACACACACACACACACACACACACATC
ATACACTCACTGATGATGGGGAATCACAAAGGAACTTAAACGATACATGT
GATAAGCTGTGTTTGAACACCATGTACTACCCATACTCCTAATGGGCAAA
TTATTATTTTTTTACTTTGATCATTATAATGTGATCAGCTTTAGCTTATG
TGCAACTTGGCAACTCTTAAATTATTGACACAAGCAATCTGATTTGAGTC
AACATTTTCCTCCATAGCAGAATACCCATATCTTTACAAAGTTACAATGT
TCTATAATGTAGTAGCTATATTTTCTTAGAGAGTTATAATGCTCAGTTTT
TAAAATGGTGTTATGCTGTAGTTAACTGAGATGTTTGCTGTGGAAATTTA
AAGAGGCTCTGAACTTTAATTGCTTAGTACAGTGCCTGACAGAAAGGACT
TAAAATGATACATTTCTTGAATTTTTATAAACAGAGAAGTAAATATTATA
TATGATCTTTATATATTTGTATTAGCATTTGCACTTCTTTGTATTACAAA
ATAATTTATACTTACAAAAATCTCATATGGCTGTCAAACTATGTTAG
ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGGT
GAAAAGCACCTGAAAAAAAGGTTCAGCATCCTTAATCATCAGGGAAATGT
AAATCAAAACAACCCTGAGATTCCATCTCACACCAGTCAGAATGGCTAAG
ATTCTGCAATACCTCTCCTGAGCATATATCCAGAAGATGTTCCAACTGGT
AAGAAAGACACATGCTCTACTATGTTCATAGCAGCCTTATTTATTTATTT
TTTTTCCATTTTTTATTAGGTATTTAACTCTTTTACATTTTTAATGCTAT
ACCAAAAGTCCCCCATATCCATTTATCCCNANNTCCCTGCCCACCCACTC
CCCCTTTTTGGCCCTGGTGTTCCCCTGCACTGAAAAAAATAAAGATTGCG
GGGCGGAGGGGTCTCTCTTTCCAGCGATGGCCGACTAGGCCATCTTTTGA
TATATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGCCAGCCTATAAT
GTTGTTCCTCCTATAGGGTTGCACATTTCTTTATTTTTTTGGCTACTTTC
TTCATCTCCTCCACTGTTATTCCCCCGATCCCTCCATTCTTTGACTGCGT
AGCATCCACTTCTGTGCTTATTAGCCTTATTTACACTACCCCTTATTCTG
TTAATAACCTTGATGCTCCCTTACCCTCACTAACCGTTTTATTTAATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no234_i23.b1 MSMg01no234_i23.b1 CHROMAT_FILE:
MSMg01no234_i23.b1 PHD_FILE: MSMg01no234_i23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:51:34 2005
         (434 letters)



>mm_chr6_105520087_105520920
          Length = 834

 Score =  781 bits (404), Expect = 0.0
 Identities = 428/438 (97%), Gaps = 4/438 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaagtacgaatacctgtgctcatacacacacacacacacacacacacacacacacac--- 57
           |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||   
Sbjct: 712 gaagtacgaatacctgtgttcatacacacacacacacacacacacacacacacacacaca 653

                                                                       
Query: 58  -acacatcatacactcactgatgatggggaatcacaaaggaacttaaacgatacatgtga 116
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 tacacatcatacactcactgatgatggggaatcacaaaggaacttaaacgatacatgtga 593

                                                                       
Query: 117 taagctgtgtttgaacaccatgtactacccatactcctaatgggcaaattattatttttt 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 taagctgtgtttgaacaccatgtactacccatactcctaatgggcaaattattatttttt 533

                                                                       
Query: 177 tactttgatcattataatgtgatcagctttagcttatgtgcaacttggcaactcttaaat 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 tactttgatcattataatgtgatcagctttagcttatgtgcaacttggcaactcttaaat 473

                                                                       
Query: 237 tattgacacaagcaatctgatttgagtcaacattttcctccatagcagaatacccatatc 296
           ||| || | ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 472 tatcgagagaagcaatctgatttgagtcaacattttcctccatagcagaatagccatatc 413

                                                                       
Query: 297 tttacaaagttacaatgttctataatgtagtagctatattttcttagagagttataatgc 356
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 tttagaaagttacaatgttctataatgtagtagctatattttcttagagagttataatgc 353

                                                                       
Query: 357 tcagtttttaaaatggtgttatgctgtagttaactgagatgtttgctgtggaaatttaaa 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 tcagtttttaaaatggtgttatgctgtagttaactgagatgtttgctgtggaaatttaaa 293

                             
Query: 417 gaggctctgaactttaat 434
           ||||||||||||||||||
Sbjct: 292 gaggctctgaactttaat 275


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 834
Length adjustment: 9
Effective length of query: 425
Effective length of database: 825
Effective search space:   350625
Effective search space used:   350625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)