Query= MSMg01no234_n15.b1 MSMg01no234_n15.b1 CHROMAT_FILE:
MSMg01no234_n15.b1 PHD_FILE: MSMg01no234_n15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:51:58 2005
(700 letters)
>mm_chr6_108511086_108512185
Length = 1100
Score = 1241 bits (642), Expect = 0.0
Identities = 677/696 (97%), Gaps = 13/696 (1%)
Strand = Plus / Minus
Query: 5 gaattcaggggaagacagtctacgtggccttgcttgtggaagtggtcaggttgcttctaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 gaattcaggggaagacagtctacgtggccttgcttgtggaagtggtcaggttgcttctaa 733
Query: 65 tatgtgcacttagaaccaagggaagtcaggagaaaattgaaaaagaaagaaaggaaggaa 124
||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 tatgtgcacagagaagcaagggaagtcaggagaaaattgaaaaagaaagaaaggaaggaa 673
Query: 125 gaaagagagaaaaaaagaaagagagaaagaaagagcaaccattctccccaaaacagacca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 gaaagagagaaaaaaagaaagagagaaagaaagagcaaccattctccccaaaacagacca 613
Query: 185 aactccctaaacaaaacaaaaaacaaaaacaaaacaaaacaaaaaacaaacaaacaagca 244
|||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 612 aactccctaaacaaaacaaaaaacaaaaac------------aaaacaaacaaacaagca 565
Query: 245 aaaaaagatgaggctgcagatggctgaggactgctgtcaagttaccacaatcaaggcaga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aaaaaagatgaggctgcagatggctgaggactgctgtcaagttaccacaatcaaggcaga 505
Query: 305 atgaaatttttaaaaactgtggttagaaaacacaacctaagaggcaggtaagtgtggtcc 364
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 atgaaatttttaaaaactctggttagaaaacacaacctaagaggcaggtaagtgtggtcc 445
Query: 365 attgatttctttgagacaggtctttccttgaacctggagctaggctggcagccaagcagt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 attgatttctttgagacaggtctttccttgaacctggagctaggctggcagccaagcagt 385
Query: 425 ctcagggatccttctgtctttatccccccaccccaacagcaatggagttataggtgcaca 484
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctcagggatccttctgtctttat-cccccaccccaacagcaatggagttataggtgcaca 326
Query: 485 tggagctacacctagcctttaaaagtgtgggcactggaatttgtacttagctcctcatcc 544
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 325 tggagctacacctagcctttaaaagtgcgggcactggaatttgtacttagctcctcatcc 266
Query: 545 ttgcatagcaagtacccatcctcaccgagccacccacagccgttttctagtatttgcggc 604
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 265 ttgcatagcaagtacccatcctcaccgagccacccacagccattttctagtatttgcggc 206
Query: 605 atctctgtactttggttgtacctgatctattatatccactacacacagactttatgacta 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 atctctgtactttggttgtacctgatctattatatccactacacacagactttatgacta 146
Query: 665 tatccttgcctacgactggtacttcctggtttctgt 700
||||||||||||||||||||||||||||||||||||
Sbjct: 145 tatccttgcctacgactggtacttcctggtttctgt 110
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 700
Length of database: 1100
Length adjustment: 10
Effective length of query: 690
Effective length of database: 1090
Effective search space: 752100
Effective search space used: 752100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no234_n15.g1 MSMg01no234_n15.g1 CHROMAT_FILE:
MSMg01no234_n15.g1 PHD_FILE: MSMg01no234_n15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:51:58 2005
(290 letters)
>mm_chr6_108479902_108480591
Length = 690
Score = 522 bits (270), Expect = e-153
Identities = 286/300 (95%), Gaps = 14/300 (4%)
Strand = Plus / Plus
Query: 5 tgaattttctgcccaggaggatgtaaatactacataagtggggacattagaggtaagaga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 tgaattttctgcccaggaggatgtaaatactacataagtggggacattagaggtaagaga 250
Query: 65 caaaatatatgattcccagaaagatacagttgcccttttttctgctgtattcaagggaga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 caaaatatatgattcccagaaagatacagttgcccttttttctgctgtattcaagggaga 310
Query: 125 agactgaattcttgaatgttagaagcacaaaaaaaaaaaaaaa--------------cat 170
||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 311 agactgaattcttgaatgttagaagcacaaaaaaaaaaaaaaaaaaaaaaaaaaaaacat 370
Query: 171 taaaaggaaaggtgttttgtttaaaaaatgaatgatgaatttcttttcctaactaaacac 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 taaaaggaaaggtgttttgtttaaaaaatgaatgatgaatttcttttcctaactaaacac 430
Query: 231 agattcacttatgtatcttgaaattccacctcataatcttagataccccccccccagaag 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 agattcacttatgtatcttgaaattccacctcataatcttagataccccccccccagaag 490
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space: 191361
Effective search space used: 191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
