BAC Information

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BAC

Clone NameMSMg01-235D06
Chromosome6 (Build37)
Map Location 10,586,389 - 10,586,684
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC330264
Downstream geneLOC100040285, LOC667650, AA545190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-235D06.T7 (MSMg01no235_d06.b1)MSMg01-235D06.TJ (MSMg01no235_d06.g1)
ACCAG400853AG400854
length724721
length of high quality
(start - end)
491 (45 - 535)296 (77 - 372)
definitionCHROMAT_FILE: MSMg01no235_d06.b1 PHD_FILE: MSMg01no235_d06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:28 2005CHROMAT_FILE: MSMg01no235_d06.g1 PHD_FILE: MSMg01no235_d06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGTAGCACCATTCCTTGAAAATGCTGTCATTTTTCCACTGGATAGT
TTTAGCACCTTTTCAAAGATCAAGTGATGATAGATGTGTGGGTTCATTTC
TGGGTCTTCAATTCTACTCCATTGATCAACCTGTCTGTTAATGTATCAGT
ACCATGCAGTTTTTAACCACAATCGTTCTGTAGTACAGGCATGGTGATTC
CACCAGAGGTTCTTCTATTGTTGATAATAGTTTTTGCTATCCTAGGTTTT
TTGTTATTCCAGATAAATATGCAAATTTTCCTTTCTAAATCCGTGAAGAA
TTGAGTTGGAATTCTGATGGGGATTGAATTGAATCTGAAAATTCCGTTTG
GTAAGATCTCTATTTTTACCACATTAATCCTGCCAATCTGTGAGCATGGG
AGATCTTTCCATATTTTGAGATCTTCTTCAATTTATTTCTTCAGAGACTT
GAATTTCTTATCATACAGATCTTTCAATCCCTTAGAGTCATACCAAGTTA
TTTTATATCATTTGTGATTATTATGAGGGGTGTTGTTTCCCTAATTTTCT
TTCTCATCCTGGCTATCTTTTGTGCAGAAAAAAGCCACTGATTTTGTTTG
AGTTAATTTTCCTATCCAGTCAACTTCCTTGAAATTGTTTATCATGTTTA
GGAAGTTCTCCATGTGGAATTTTT
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTGTATTTCTAGTGAGGATTTGAG
GTGAAGTCACTGTTCTTTGTGGAATAACAGCAACTTGATTGAACCTCATT
TAGTACAAATAATTGCCAGTGGCAGGGTGGCCCTATTTTGAAGTGTGCTC
ACATTTAAATTGTGATTTCAATATTTTCTAGTCTGAGACTATTGAAGATG
GTAAAGTTTTCTATATGTGTGTAATTATGGTAATTATTATTGTAAATTGT
GCCCACTTACTTTGAACTGCAGCTTTGACATTAATAATAAACCTATAACC
TATTTTCACAAAACACTTATCTATTACCACCCCTCACAACTGTGTTTTTT
CCCTTTCAGTTTTGCTGTTGCCCGCCCCCTATTTCAGATTTCTTAACAGA
GCCTGACAAACAATGGAACACAAAACAATGTTCCAAATCCACCAACATAA
AAACGTTCCCCTTAATATTTGTGCTGTCCTAGATATATATAATGAAGAGG
AATCCCCATATAATTTAGTTTTTTAACTTGAAGATTCACTTGTATTGTCT
AATTCATCACAAAAAAATCAGATTTGCCCCTGTCACTTAATAAATTCATC
AAGTTAAATCCATTGGAGTGGCCACTCGCTGCTTCGTTCGTCCATTTTGT
TCGACCATAAACATACTCATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no235_d06.g1 MSMg01no235_d06.g1 CHROMAT_FILE:
MSMg01no235_d06.g1 PHD_FILE: MSMg01no235_d06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:28 2005
         (296 letters)



>mm_chr6_10586189_10586884
          Length = 696

 Score =  557 bits (288), Expect = e-163
 Identities = 294/296 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgtatttctagtgaggatttgaggtgaagtcactgttctttgtggaataacagcaactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ttgtatttctagtgaggatttgaggtgaagtcactgttctttgtggaataacagcaactt 437

                                                                       
Query: 61  gattgaacctcatttagtacaaataattgccagtggcagggtggccctattttgaagtgt 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 436 gattgaacctcatttagtacaaataattgccagtgacagggtggccctattttgaagtgt 377

                                                                       
Query: 121 gctcacatttaaattgtgatttcaatattttctagtctgagactattgaagatggtaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 376 gctcacatttaaattgtgatttcaatattttctagtctgagactattgaagatggtaaac 317

                                                                       
Query: 181 ttttctatatgtgtgtaattatggtaattattattgtaaattgtgcccacttactttgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ttttctatatgtgtgtaattatggtaattattattgtaaattgtgcccacttactttgaa 257

                                                                   
Query: 241 ctgcagctttgacattaataataaacctataacctattttcacaaaacacttatct 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 ctgcagctttgacattaataataaacctataacctattttcacaaaacacttatct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space:   197169
Effective search space used:   197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)