TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTATTTTACAATGTGTGACCTGGGCTGACCTTGACACCCATGTGT
GCAGAAAGAACCCTGTCATGCATTACATTAGAATGAATAGTCTTGGCATC
CTGGCATGACTCATGAACCTCCTTTGTTAACAAGGCTTTAGTGCAAAGTA
TGTTGGGATTTCTATTTTTCCTAGGCTTGGATATGAAATTGCTTTTATCT
TCACTTAAGTCATGTATTTCCTGTCATAGCATTTCTTTTTGAACAGAGAT
GAAACGCTGAATACATTGAATTTGAATGCATTAAAGTAAATGTATACAGC
ACAAAATGAATAAAGAGGGAAAAAAAAGCTCAACAGAAAAACCATATTAG
AAGCTGAATGTAAAGACAGCGAATATGAAAAGTATCTCATGTCACAGCAA
AATAGATCTTTCCTGTTTTAAATTGTTTCTGTCACATACATGGCACAGTG
ATGCAAAGAAAACCCAAAGAAAACTAGGACCAGAAATGAGGTCACCACTG
TGACCTGTTCAAACCTGATCACACAACGCTTTAGCCACATAAACATGTTT
GCAGGGGAAATGTGGCAAAGTGTGGGTGGGGGAGTAGGTGAGAGAATTTC
TACCATGCCGAATGTCTATCTTATTGCCTTTTCTATTGTTATCTTCTAAA
AACGTAATGCTGGTACATTG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATGAAATTCTTAGGCAAATGGATG
GATCTGGAGGATATTATTCTGAGTGAGGTAACCCAATCACAGAAGAACAC
ACATGATATGCACTCACTGATAAGCAGATATTAGCCCAGAAACTTAGAAT
ATCCATGATACAATTTGCAAAACATATGAAACTCAAGAAGAAGGAAGACC
AAAGTGTGGATAATTTGCTCCTTCTTAATATGGGGAACAAAATACCCATG
GAAGGAGTTACAGAGACAAGGTTTGGAGCTGAGATAGAAGGAACGACCAT
CCAGAGACTGCCCCACCCAGGGATCTATCACATATACAGCCATCAAACCC
AGACACTATTGCACATGCCACAAAGATTTTGCTGACAGGACCCTGATATA
GCCTCTCTTGTGAGGCTATGCCTTGGCTGGCAAATACAGAAGTGGATGCT
CATAGTCATCTATTGGATGGAACACAGGGCCTCCAATGAAGGAGCTAGAG
AAAGTACCTAAGGAGCTAAAGGGTCTGCAACCCTATAGGAGGAACAACAA
TATGAACTAACAAGTACCCCCCAGAGCTGTGTCTCTAGTTGCATATGTAG
CAGAGGATGACCTAGTAGGCCATCAATGGGAGGAGAGGCCCTTGGTCTTG
TGAAGATCATATGCTCTAGTANAGG

Query= MSMg01no235_k05.b1 MSMg01no235_k05.b1 CHROMAT_FILE:
MSMg01no235_k05.b1 PHD_FILE: MSMg01no235_k05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:01 2005
         (599 letters)



>mm_chr6_103233973_103234969
          Length = 997

 Score =  934 bits (483), Expect = 0.0
 Identities = 560/593 (94%), Gaps = 15/593 (2%)
 Strand = Plus / Plus

                                                                       
Query: 9   tcctattttacaatgtgtgacctgggctgaccttgacacccatgtgtgcagaaagaaccc 68
           |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 209 tcctattttacaatgtgtaacctgggctgaccttgacacccatgtgtgcagagagaaccc 268

                                                                       
Query: 69  tgtcatgcattacattagaatgaatagtcttggcatcctggcatgactcatgaacctcct 128
           ||||||| | |||||||||| |||||||||||| ||||||||||||||||||| ||||||
Sbjct: 269 tgtcatgtagtacattagaaggaatagtcttggaatcctggcatgactcatgagcctcct 328

                                                                       
Query: 129 ttgttaacaaggctttagtgcaaagtatgttgggatttctatttttcctaggcttggata 188
            ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||
Sbjct: 329 ctgttaacaaggctttagtgcaaagtacattgggatttctatttttcctaggcttggata 388

                                                                       
Query: 189 tgaaattgcttttatcttcacttaagtcatgtatttcctgtcatagcatttctttttgaa 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tgaaattgcttttatcttcacttaagtcatgtatttcctgtcatagcatttctttttgaa 448

                                                                       
Query: 249 cagagatgaaacgctgaatacattgaatttgaatgcattaaagtaaatgtatacagcaca 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 cagagatgaaacgctgaatacattgaatttgaatgcattaaagtaaatgtatacagcaca 508

                                                                       
Query: 309 aaatgaataaagagggaaaaaaaagctcaacagaaaaaccatattagaagctgaatgtaa 368
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 aaatgaa--aagagggaaaaaaaagctcaacagaaaaaccatattagaagctgaatgtaa 566

                                                                       
Query: 369 agacagcgaatatgaaaagtatctcatgtcacagcaaaatagatctttcctgttttaaat 428
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 agacagcgaatatgaaaagtatctcatgtcacagcaaaatagatctttcctgttttaaat 626

                                                                       
Query: 429 tgtttctgtcacatacatggcacagtgatgcaaagaaaacccaaagaaaactaggaccag 488
           ||||||||||||||||||||||||||||||     ||||      ||||||||| |||||
Sbjct: 627 tgtttctgtcacatacatggcacagtgatg-----aaaa------gaaaactagaaccag 675

                                                                       
Query: 489 aaatgaggtcaccactgtgacctgttcaaacctgatcacaca--acgctttagccacata 546
           |||||||||||| || |||||||| |||||||||||||||||  ||||||||||||||||
Sbjct: 676 aaatgaggtcacaacagtgacctggtcaaacctgatcacacacaacgctttagccacata 735

                                                                
Query: 547 aacatgtttgcaggggaaatgtggcaaagtgtgggtgggggagtaggtgagag 599
           |||||||||||||||||||||||||||| | ||||||| ||||| ||||||||
Sbjct: 736 aacatgtttgcaggggaaatgtggcaaactatgggtggaggagtgggtgagag 788


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 997
Length adjustment: 10
Effective length of query: 589
Effective length of database: 987
Effective search space:   581343
Effective search space used:   581343
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)