BAC Information

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BAC

Clone NameMSMg01-235P19
Chromosome6 (Build37)
Map Location 109,991,887 - 110,132,488
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC639110, LOC100043720
Downstream geneGrm7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-235P19.T7 (MSMg01no235_p19.b1)MSMg01-235P19.TJ (MSMg01no235_p19.g1)
ACCAG401381AG401382
length713715
length of high quality
(start - end)		604 (45 - 648)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no235_p19.b1 PHD_FILE: MSMg01no235_p19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:26 2005CHROMAT_FILE: MSMg01no235_p19.g1 PHD_FILE: MSMg01no235_p19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,991,887 - 109,992,486)(110,132,198 - 110,132,488)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTCCATCCCTCTCAGTAGAAATCTCTTAGCATTAGCCACCAGGCC
ATCTTCAGGATCTGGGTTGCAACTAGATAGGGCACAACCTATAAGTAGAG
AGAAACCTACCCAAGGTAAGGGATGCTTTCTTCTCAGCAGTCAGCATCTG
AGCTCTGGAAAACTATGCTCTAAGCATAACCAGTTATAAAATTATCAACC
TCTGCCTTTTGTTTCCCAATCTCTCTGGACAGTACATTCTTCTGAGAATT
AGGATGATTACATTGTTTAGTGTTCTCTTTAGTTATCTGGTAAACAACTG
TATCTCCGTTTGTAATTTTTCATATTGAGTTAAATTTACTAAAATAGAAT
TCTATCCACGTCTTGAACGACAAACAATTAGTCTCAAAAAACAGATAATA
ACAGACACAGAAAAAGAGAAATCCTCACAAGAAACAAAAAATAAAACATG
TCTAANATCTAGTGTAAATTTTACAAAAAGAAGAACACAGTGAGTTTTAA
CTTTTAGCTGTGGTTCTTAGCATGTCTGCAGGACAGTATAAACATTCAGT
GCTGTAGATGTTGCAGTGTTTAGCAAACGGATCCTGGGAGGATCCATGTG
GTGCCACTGTGTCATTAGCAATAGTGTGATACAGATGAGACAGTCTCTGA
CTAATGACTACAT

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGTCTTCCAGATATAATATTTTCA
AAATGTGAAGTCTTAAAAGAAACTAACCGAAGGACATATTTAGAATGATA
TCTAATAAATTTTGAAGTTCCAATTCTATTTAACAAATGATACAGCTTTG
CTAGCTTTTAAATGCTACTGGGTACAAATGTAGCCTACATATATTTTTAT
ATTCAGAAAGATAAACCAGAGAAGATGATCTATGAAAGCTAGATAGTAGT
CTCCTTGGGCCTTTCAAAAGTACTGAAAGAAAATTAAGTATGCTTCATCC
TTAATAGTTTTTTTTAAAGGCCTGCATGCGACAAAAATATTTCAATAGTA
ACATCTTTTATAAGATATGGCCCCGCTTTTGCTGATTGCTTTTTTTTTTG
CAGTACATCTCCTAGTGTAAGAATGTAACACATAAAACAATGTAATTTTG
AATAAATATTTCCCTGTAGTTGTACTACAAAGTAATTGCTACAATAAAAC
TTCAGAGAAATTGTCAGTTTACATATCAGAACATGAAAGGTATTTTCCCA
TTTATTTAATTATAGAGAAACATTTTTTCTTCGGGCCAGACAATGACATT
TTCCTTATGTTTCATTTTGTAACCTTACNAATAAATTNAAGGGAAAAAAG
ACTTTTTCTGGTACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no235_p19.b1 MSMg01no235_p19.b1 CHROMAT_FILE:
MSMg01no235_p19.b1 PHD_FILE: MSMg01no235_p19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:26 2005
         (604 letters)



>mm_chr6_109991683_109992686
          Length = 1004

 Score = 1100 bits (569), Expect = 0.0
 Identities = 592/600 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttccatccctctcagtagaaatctcttagcattagccaccaggccatcttcag 64
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 205 gaattctttccatccctctcagtagaaatctcttagcattagctaccaggccatcttcag 264

                                                                       
Query: 65  gatctgggttgcaactagatagggcacaacctataagtagagagaaacctacccaaggta 124
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gatctgggttgcaactagatatggcacaacctataagtagagagaaacctacccaaggta 324

                                                                       
Query: 125 agggatgctttcttctcagcagtcagcatctgagctctggaaaactatgctctaagcata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agggatgctttcttctcagcagtcagcatctgagctctggaaaactatgctctaagcata 384

                                                                       
Query: 185 accagttataaaattatcaacctctgccttttgtttcccaatctctctggacagtacatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 accagttataaaattatcaacctctgccttttgtttcccaatctctctggacagtacatt 444

                                                                       
Query: 245 cttctgagaattaggatgattacattgtttagtgttctctttagttatctggtaaacaac 304
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cttctgagaattaagatgattacattgtttagtgttctctttagttatctggtaaacaac 504

                                                                       
Query: 305 tgtatctccgtttgtaatttttcatattgagttaaatttactaaaatagaattctatcca 364
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgtatcttcgtttgtaatttttcatattgagttaaatttactaaaatagaattctatcca 564

                                                                       
Query: 365 cgtcttgaacgacaaacaattagtctcaaaaaacagataataacagacacagaaaaagag 424
           ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cgtcttgaatgaaaaacaattagtctcaaaaaacagataataacagacacagaaaaagag 624

                                                                       
Query: 425 aaatcctcacaagaaacaaaaaataaaacatgtctaanatctagtgtaaattttacaaaa 484
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 625 aaatcctcacaagaaacaaaaaataaaacatgtctaaaatctagtgtaaattttacaaaa 684

                                                                       
Query: 485 agaagaacacagtgagttttaacttttagctgtggttcttagcatgtctgcaggacagta 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 agaagaacacagtgagttttaacttttagctgtggttcttagcatgtctgcaggacagta 744

                                                                       
Query: 545 taaacattcagtgctgtagatgttgcagtgtttagcaaacggatcctgggaggatccatg 604
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 745 taaacattcagtgctgtagatgttgcagtgtttagcaaactgatcctgggaggatccatg 804


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space:   590436
Effective search space used:   590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no235_p19.g1 MSMg01no235_p19.g1 CHROMAT_FILE:
MSMg01no235_p19.g1 PHD_FILE: MSMg01no235_p19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:26 2005
         (292 letters)



>mm_chr6_110131998_110132689
          Length = 692

 Score =  532 bits (275), Expect = e-155
 Identities = 287/291 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtcttccagatataatattttcaaaatgtgaagtcttaaaagaaactaaccgaaggaca 60
           |||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 491 tgtcttccaggtatagtattttcaaaatgtgaagtcttaaaagaaactaacagaaggaca 432

                                                                       
Query: 61  tatttagaatgatatctaataaattttgaagttccaattctatttaacaaatgatacagc 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 431 tatttagaatgatatctaataaattttgaagttccaattctacttaacaaatgatacagc 372

                                                                       
Query: 121 tttgctagcttttaaatgctactgggtacaaatgtagcctacatatatttttatattcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tttgctagcttttaaatgctactgggtacaaatgtagcctacatatatttttatattcag 312

                                                                       
Query: 181 aaagataaaccagagaagatgatctatgaaagctagatagtagtctccttgggcctttca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 aaagataaaccagagaagatgatctatgaaagctagatagtagtctccttgggcctttca 252

                                                              
Query: 241 aaagtactgaaagaaaattaagtatgcttcatccttaatagttttttttaa 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 aaagtactgaaagaaaattaagtatgcttcatccttaatagttttttttaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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