BAC Information

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BAC

Clone NameMSMg01-236P11
Chromosome6 (Build37)
Map Location 35,972,994 - 35,973,447
singlet/doubletsinglet
Overlap genenone
Upstream geneCnot4, Nup205, 1810058I24Rik, Slc13a4, BC064033, 1700065J11Rik, Mtpn, LOC100039312, LOC100039327
Downstream gene9330158H04Rik, Chrm2, EG620863, LOC100039370, Ptn, LOC100039514, Dgki, EG665024
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-236P11.T7 (MSMg01no236_p11.b1)MSMg01-236P11.TJ (MSMg01no236_p11.g1)
ACCAG402065AG402066
length787812
length of high quality
(start - end)
464 (102 - 565)43 (128 - 170)
definitionCHROMAT_FILE: MSMg01no236_p11.b1 PHD_FILE: MSMg01no236_p11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:40 2005CHROMAT_FILE: MSMg01no236_p11.g1 PHD_FILE: MSMg01no236_p11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCCCCCCCCNTTTNNNNNTNNCCCATCCGGCCCCCCCAACACCCNNNNN
NNGTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCACAAGATC
CGCGGAATTCAGTAAAATATACCTGTAATTTTAGATCATGGATCATGACA
ATCTATCTCCCAATGTACTTGTACCAACACGGCTGCTAAATTCCAGCAAC
CCTGACACTAGTGAAGCATCTCACTCTAGGGTGGACCACAGACTGTGCCA
CTATGAGCTTCCTATAGTGTCCTAAATCTGTACCAGTGATCTGCTGAATA
AATAACAATGATAATGAAAATTAAAAAGGAGACAAAATCATCCTTAGCAG
CATCTTCAAACTCTGGCACGTGCAGTGCTATATATGTGGGGTAACTCTCT
CTCTCTCTTTTTTTTAAAATTTATTTGATGACTCTAACTCAGTTGTTGCA
TAAGTTGATTCCATTTCTGAAACTGGTTCTGGCCAGTAGATATGTATATG
AGGCTATGGTCATATCCCTAGCTCTGAGAACATGAGATCATAACTAATCA
GCTTTGGCTCCTAAGCATGGAGCTTAAAAAAGTTTAACAAACCACCTCAA
ATTATATGTAAAATGTTACATAAGGTTCCTTTTTTCTCTTTAACATATGC
CTGGTAGATATGCACACTATTTTACAACTGAATGAATGACTACGTCCAGT
CCCATGCACACCCTGCACACCAGCTCTTTCATGACCTATCCCCTACCATC
CCGCTTGATACACGACACTCCATTTATTACTCTAAGA
TTTCTTCCCTTTCCTCCCTTTTTTCTCTTCCCTATATTTTTTTTNNCCNT
TACTATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATCTTGTAGAACTTCTCTACATT
CCTTAACTGCGCTCCTATACTTTCCCCGCCTTAGGATGATAACTGCATTT
TCTCTGAAAATATTATATGAAACCTGTATAATATAATCAGCCAGAGTCTA
ACTAATATTTACTAGTGAAAGTCTAAAGGCAATATAATATATTGCTTAAT
TGGTAAAGGCAGAATATCAGGGAATCACTTTTATAAAATCAGAGTGAATG
ACATAAAATTTATTATCACAATAATATTTTAGATGGGAAAAATAAGAAGT
ATTTGAGAATAAATGTTTCTTACCCCCTCCCCCCCCATTATCGTTAATAT
AGATTACTTCTTCTTCATGCCCTATCTTTATCCTAAAGACCTACCGGATA
TGACAGCGTCCCAGCAATTTTCTTATCTTACATGATATGACACGGCGATC
AGATGTGATTCCTATTACCTAAAAGAGAATAACCCAACAGACGGCACGCC
GCCTGGTATACAGAGCAAAGATTTAAGAGGTACCTCCCGCCCTTGTTTTG
TATCTTACCCCAACTTTGATTTTCCCGCCCATTGTAGTCAGAACCATTAT
TTGTATGACCTATATTGTCCCGTTCCGCCAAAAAAGTTACCCACCTATAT
TACCCTGCCGCACTATTCCTTGGTAGTCTTAAAACTTTTTAAAAAGCAAC
CTTTAAGTTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no236_p11.b1 MSMg01no236_p11.b1 CHROMAT_FILE:
MSMg01no236_p11.b1 PHD_FILE: MSMg01no236_p11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:40 2005
         (464 letters)



>mm_chr6_35972791_35973647
          Length = 857

 Score =  764 bits (395), Expect = 0.0
 Identities = 442/461 (95%), Gaps = 7/461 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattcagtaaaatatacctgtaattttagatcatggatcatgacaatctatctcccaat 63
           |||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 204 gaattcagtaaaatataattgtaattttagatcatggatcataacaatctatctcccaat 263

                                                                       
Query: 64  gtacttgtaccaacacggctgctaaattccagcaaccctgacactagtgaagcatctcac 123
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtacttgtaccaacagggctgctaaattccagcaaccctgacactagtgaagcatctcac 323

                                                                       
Query: 124 tctagggtggaccacagactgtgccactatgagcttcctatagtgtcctaaatctgtacc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tctagggtggaccacagactgtgccactatgagcttcctatagtgtcctaaatctgtacc 383

                                                                       
Query: 184 agtgatctgctgaataaataacaatgataatgaaaattaaaaaggagacaaaatcatcct 243
           |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 384 agtgatctgccgaataaataacaatgataatgaaaattaaaaaggagacaaaatcatctt 443

                                                                       
Query: 244 tagcagcatcttcaaactctggcacgtgcagtgctatatatgtggggtaactctctctct 303
           |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct: 444 tagcagcatcttcaaactctggcacgtgcagtgctaaatatgtgggataactctctctct 503

                                                                       
Query: 304 ctcttttttttaaaatttatttgatgactctaactcagttgttgcataagttgattccat 363
           |||||||||||    |||   |||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctctttttttt----ttt---tgatgactctaactcagttgttgcataagttgattccat 556

                                                                       
Query: 364 ttctgaaactggttctggccagtagatatgtatatgaggctatggtcatatccctagctc 423
           ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 557 ttctgaaactggttctggccagtagatatgtatatgagggtgtggtcatatccctagctc 616

                                                    
Query: 424 tgagaacatgagatcataactaatcagctttggctcctaag 464
           |||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 617 tgagaacatgagatcataactaattagcttcggctcctaag 657


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 857
Length adjustment: 10
Effective length of query: 454
Effective length of database: 847
Effective search space:   384538
Effective search space used:   384538
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)