Query= MSMg01no237_a02.b1 MSMg01no237_a02.b1 CHROMAT_FILE:
MSMg01no237_a02.b1 PHD_FILE: MSMg01no237_a02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:42 2005
(188 letters)
>mm_chr6_127510917_127511508
Length = 592
Score = 339 bits (175), Expect = 9e-98
Identities = 184/189 (97%), Gaps = 4/189 (2%)
Strand = Plus / Minus
Query: 1 cgccccactgcgcgcgctccaggatctacaccataccgtggtgtcccagcttagcgaagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 cgccccactgcgcgcgctccaggatctacaccataccgtggtgtcccagcttagcgaagc 330
Query: 61 aacttg----tgactactaaagcctgcagtctgggtggcgagggcggagccgtcgctgac 116
|||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 329 aacttgtgactgactactaaagcctgcagtctgggtggcgagggcggggccgtcgctgac 270
Query: 117 tggagcccaagacttcctgtgccccctctttgctggtctttgccttagaggacccttgct 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tggagcccaagacttcctgtgccccctctttgctggtctttgccttagaggacccttgct 210
Query: 177 caatgagcc 185
|||||||||
Sbjct: 209 caatgagcc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 188
Length of database: 592
Length adjustment: 8
Effective length of query: 180
Effective length of database: 584
Effective search space: 105120
Effective search space used: 105120
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no237_a02.g1 MSMg01no237_a02.g1 CHROMAT_FILE:
MSMg01no237_a02.g1 PHD_FILE: MSMg01no237_a02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:42 2005
(274 letters)
>mm_chr6_127396241_127396914
Length = 674
Score = 447 bits (231), Expect = e-130
Identities = 263/283 (92%), Gaps = 16/283 (5%)
Strand = Plus / Plus
Query: 1 tctggcttattagaaagtttgtgcctctggcttggcctcctc---------ctcttcctc 51
|||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 199 tctggcttattagaaagtttgtgcctgtggcttggcctcctcttcttcctcctcttcctc 258
Query: 52 ctatcaggaaaactgttgcctgtgtgctagcgccatcttgtgttggaaattagcgagctt 111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ctatcaggaaaactgttgcctgtgtgctagcgccatcttgtgttggaaattagcgagctt 318
Query: 112 tccagccatggagcaaaggagactgactacccactctgtacccagtgaaaatgcagatag 171
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 319 tccagccacggagcaaaggagac-------ccactctgtacccagtgaaaatgcagatag 371
Query: 172 aaagaaactacaaatgaaatattgtatgccctaagtcgtctaggcaagacgtgtacaatg 231
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 372 aaagaaactacaaatgaaatattgtatgccctaagtcatctaggcaagacgtgtacaacg 431
Query: 232 tccttttccaaacatggatgctgtttgtcctctctctgagtag 274
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tccttttccaaacatggatgctgtttgtcctctctctgagtag 474
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space: 176225
Effective search space used: 176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
