BAC Information

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BAC

Clone NameMSMg01-237N21
Chromosome6 (Build37)
Map Location 134,330,558 - 134,446,151
singlet/doubletdoublet
Overlap geneBcl2l14, Lrp6
Upstream geneEG545884, EG626372, LOC100043649, LOC100043653, EG545886, LOC622962, Kap, LOC100043655, LOC100043656, LOC668063, Etv6, LOC100043660
Downstream geneMansc1, Loh12cr1, LOC100043884, Dusp16, Crebl2, Gpr19, Cdkn1b, 1190002F15Rik, Apold1, Ddx47, Gprc5a, Gprc5d, LOC100043668, Hebp1, 8430419L09Rik, Gsg1, Pbp2, LOC100043890, Emp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237N21.T7 (MSMg01no237_n21.b1)MSMg01-237N21.TJ (MSMg01no237_n21.g1)
ACCAG402691AG402692
length705718
length of high quality
(start - end)		317 (313 - 629)643 (76 - 718)
definitionCHROMAT_FILE: MSMg01no237_n21.b1 PHD_FILE: MSMg01no237_n21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:47 2005CHROMAT_FILE: MSMg01no237_n21.g1 PHD_FILE: MSMg01no237_n21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,330,558 - 134,330,874)(134,445,546 - 134,446,151)
sequence
XXXXXXXXXXXXXXXXXXXXXXATGCGAACGGAGCCGCGGAATTCTACAT
CTTGCACAACAAGCAGCAGAAGGGGGACTATGTGTCACACTAGGTAAAGC
TTGATTTTAACCAACATCAAAGCTCACCTCCACAGTGACACACTGTCTCC
AACAAGGCTATACCTACTCCAACAAGTGCCTATAACTGCCACTCCCCATG
ATCCAAGAATTAAAACATGAGTCCATGGGAGCCATACCTATTCAAACTAC
CATGTGACTTCTGCTTCTTGTGTGTGGATAAAGATGTGACCAGCCAGATT
CTCTCTTTTTTCCACATCTTGGACTCTCCCCTGAAACCATAAGCCAAAAT
AAACCCCTGATTCTATAAGTTGCTTTTTGTCAGAGAGTTTTATCACACAC
AGCAACAGAAAAGTTATTAACACAGTTAGTATGTGGAATGCTGAGTATAT
TAAGTATTTTATTGAGGTGATCACATTCTAAAGACTACATGCCTCTTAGT
AGGTCCACCACACTTTAATGGGTGGCTCCACACTTAGTATACAGACAGCA
TAAATCGGATTCATGGGGTTACTTTAAAAAGTACATGAAGCTTGGAGTGA
GTTGTGATGGATCTGAAAAAGAATTGGAGGAATAATGAAGGATGAATATG
ATCAAAATATATTGTAAAATTCTCAAAAACTTCATAAAACATATTTTAAA
AGCAA

CGAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTCTGTAGACCAGGCTGGCCTTGA
ATACAGAGATACATATGGAAAACAGTTCTTAATTATATACTTTCCCTGAA
TAATTCAGGTTTAAAAAGATTCTATCGAAATAGTAATTTAAGAACCAAGG
CTCTATCTGAAAAAGAAGCCTAGTAACTGGAAATGTCTAATTCTAAGCCT
GATTATTTTCAGTAATTATATAAAATTACATAGTATAATTAACACATTGC
AATTTTCTTTTTAGTGCTAAAAGCATGTATGTATGCTCAGAGGAAGGGGT
CTTGGCCTAGGCTGGAGAGCTTTGAGGGTGGCACTGTAAACAGGTCCATG
ATAGATAGCCCTTAATTTCGCCTTTTGTGTCAGAGCATTTCTTGTTGTTT
TGCTATATTTTCTGGGCTGGTCTTGAACTCTTGAACTCTAGTAATCCTCC
TGTCTCAGCCTTCTAAGTGCAGTGTTCCCTTTCCCACCCCCTCTTTCAGC
TTGTTTACTTTTGACTATGACAGTCTGCTGCAGTTAGATTTTTGTATCAA
AGATAAAATACACGTCTCTAAATTCTTCATACACAGCTTTGAATGACCAG
CTTTCTTTGGATGGTGACTGCGGTATTTAAAACAGAACGATGCATTTCCA
GCAGTGTTTCCCAACTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_n21.b1 MSMg01no237_n21.b1 CHROMAT_FILE:
MSMg01no237_n21.b1 PHD_FILE: MSMg01no237_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:47 2005
         (317 letters)



>mm_chr6_134330358_134331074
          Length = 717

 Score =  613 bits (317), Expect = e-180
 Identities = 317/317 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacatcttggactctcccctgaaaccataagccaaaataaacccctgattctataagttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacatcttggactctcccctgaaaccataagccaaaataaacccctgattctataagttg 260

                                                                       
Query: 61  ctttttgtcagagagttttatcacacacagcaacagaaaagttattaacacagttagtat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctttttgtcagagagttttatcacacacagcaacagaaaagttattaacacagttagtat 320

                                                                       
Query: 121 gtggaatgctgagtatattaagtattttattgaggtgatcacattctaaagactacatgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtggaatgctgagtatattaagtattttattgaggtgatcacattctaaagactacatgc 380

                                                                       
Query: 181 ctcttagtaggtccaccacactttaatgggtggctccacacttagtatacagacagcata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcttagtaggtccaccacactttaatgggtggctccacacttagtatacagacagcata 440

                                                                       
Query: 241 aatcggattcatggggttactttaaaaagtacatgaagcttggagtgagttgtgatggat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatcggattcatggggttactttaaaaagtacatgaagcttggagtgagttgtgatggat 500

                            
Query: 301 ctgaaaaagaattggag 317
           |||||||||||||||||
Sbjct: 501 ctgaaaaagaattggag 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no237_n21.g1 MSMg01no237_n21.g1 CHROMAT_FILE:
MSMg01no237_n21.g1 PHD_FILE: MSMg01no237_n21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:48 2005
         (643 letters)



>mm_chr6_134445546_134446588
          Length = 1043

 Score = 1172 bits (606), Expect = 0.0
 Identities = 606/606 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   actctgtagaccaggctggccttgaatacagagatacatatggaaaacagttcttaatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 actctgtagaccaggctggccttgaatacagagatacatatggaaaacagttcttaatta 547

                                                                       
Query: 61  tatactttccctgaataattcaggtttaaaaagattctatcgaaatagtaatttaagaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 tatactttccctgaataattcaggtttaaaaagattctatcgaaatagtaatttaagaac 487

                                                                       
Query: 121 caaggctctatctgaaaaagaagcctagtaactggaaatgtctaattctaagcctgatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 caaggctctatctgaaaaagaagcctagtaactggaaatgtctaattctaagcctgatta 427

                                                                       
Query: 181 ttttcagtaattatataaaattacatagtataattaacacattgcaattttctttttagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ttttcagtaattatataaaattacatagtataattaacacattgcaattttctttttagt 367

                                                                       
Query: 241 gctaaaagcatgtatgtatgctcagaggaaggggtcttggcctaggctggagagctttga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gctaaaagcatgtatgtatgctcagaggaaggggtcttggcctaggctggagagctttga 307

                                                                       
Query: 301 gggtggcactgtaaacaggtccatgatagatagcccttaatttcgccttttgtgtcagag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gggtggcactgtaaacaggtccatgatagatagcccttaatttcgccttttgtgtcagag 247

                                                                       
Query: 361 catttcttgttgttttgctatattttctgggctggtcttgaactcttgaactctagtaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 catttcttgttgttttgctatattttctgggctggtcttgaactcttgaactctagtaat 187

                                                                       
Query: 421 cctcctgtctcagccttctaagtgcagtgttccctttcccaccccctctttcagcttgtt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 cctcctgtctcagccttctaagtgcagtgttccctttcccaccccctctttcagcttgtt 127

                                                                       
Query: 481 tacttttgactatgacagtctgctgcagttagatttttgtatcaaagataaaatacacgt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 tacttttgactatgacagtctgctgcagttagatttttgtatcaaagataaaatacacgt 67

                                                                       
Query: 541 ctctaaattcttcatacacagctttgaatgaccagctttctttggatggtgactgcggta 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66  ctctaaattcttcatacacagctttgaatgaccagctttctttggatggtgactgcggta 7

                 
Query: 601 tttaaa 606
           ||||||
Sbjct: 6   tttaaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space:   653889
Effective search space used:   653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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