Query= MSMg01no237_o09.b1 MSMg01no237_o09.b1 CHROMAT_FILE:
MSMg01no237_o09.b1 PHD_FILE: MSMg01no237_o09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:50 2005
(571 letters)
>mm_chr6_49857973_49858936
Length = 964
Score = 955 bits (494), Expect = 0.0
Identities = 525/540 (97%), Gaps = 9/540 (1%)
Strand = Plus / Minus
Query: 1 atctcttctactcctatttgtggccacattacatgtatgccccaactttgcatcaccttg 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 atctcttctactcctatctgtggccacattacatgtatgccccaactttgcatcaccttg 478
Query: 61 tcgattcatcctaattttgctttttcataatgaattatcctctcttcttaattattccct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 tcgattcatcctaattttgctttttcataatgaattatcctctcttcttaattattccct 418
Query: 121 aatgcatataaatatagtatttttcccatcttcaacacctgcacacatctgcacacatac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 aatgcatataaatatagtatttttcccatcttcaacacctgcacacatctgcacacatac 358
Query: 181 agacacattatctctcaacccattagtgcttgcagctacggttcaggttttgttttatgt 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 agacatattatctctcaacccattagtgcttgcagctacggttcaggttttgttttatgt 298
Query: 241 tttttctcttcttgcttcctttataaaaagagctatcgacaatattgccaatgccttgtc 300
||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct: 297 ttttt-------tgcttcctttataaaaagagctatcgacaatattgtcaatgccttttc 245
Query: 301 tcctaatctctgtgacctacttggccttcaccactcctagtctttagtgactattttgga 360
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 244 tcctaatctctgtgacctacttgtccttcaccactcctagtctttagtgactattttgga 185
Query: 361 gtttcattaaaaaca--gaaatattatgagaccgtggtttcattttaatcccaggtgtgg 418
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 gtttcattaaaaacacagaaatattatgagaccgtggtttcattttaatcccaggtgtgg 125
Query: 419 agttaaatcccaggagctgcatcagattcacaacagctgactatgatttgcctcatgctc 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 agttaaatcccaggagctgcatcagattcacaacagctgactatgatttgcctcatgctc 65
Query: 479 tagcaggggtgtgatcttgacaggggcagatagtttctgtgattgtgtgatctttggaat 538
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 tagcaggggtgtgatcttgccaggggcagatagtttctgtgattgtgtgatctttggaat 5
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 964
Length adjustment: 10
Effective length of query: 561
Effective length of database: 954
Effective search space: 535194
Effective search space used: 535194
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no237_o09.g1 MSMg01no237_o09.g1 CHROMAT_FILE:
MSMg01no237_o09.g1 PHD_FILE: MSMg01no237_o09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:50 2005
(349 letters)
>mm_chr6_49725909_49726657
Length = 749
Score = 659 bits (341), Expect = 0.0
Identities = 347/349 (99%)
Strand = Plus / Plus
Query: 1 tacagcactccatctgttgcctctcgtcactcacagatgtcactgcttggtctctagttt 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 tacagcactccatctgttgcctctcatcactcacagatgtcactgcttggtctctagttt 260
Query: 61 tacaaagtagcatatctggaaggtttttctaccaactcttcaaaatggttgtcctcctgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacaaagtagcatatctggaaggtttttctaccaactcttcaaaatggttgtcctcctgt 320
Query: 121 agtctttgtaaatgaaaacagaagtttcttctctgggctctgatcctcccatttatgctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtctttgtaaatgaaaacagaagtttcttctctgggctctgatcctcccatttatgctc 380
Query: 181 tatcaaatgcatatacacttttgtcactgataaaattaacaaagatttctgtctctaggc 240
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatcaaacgcatatacacttttgtcactgataaaattaacaaagatttctgtctctaggc 440
Query: 241 atagccctcacacccaaaacccatgctaggtacaagagctaatacaataatacttagttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atagccctcacacccaaaacccatgctaggtacaagagctaatacaataatacttagttc 500
Query: 301 tatagagtgccgtttgaaagcataataataacactcctgggaaattagc 349
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatagagtgccgtttgaaagcataataataacactcctgggaaattagc 549
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 749
Length adjustment: 9
Effective length of query: 340
Effective length of database: 740
Effective search space: 251600
Effective search space used: 251600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
