TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTGGGTATCTCAGTGTACTTGTAGGAATCCTAGCTTAGCGGGGCC
TGTCTCTGACTCCTTCACCTACTCCTGGGACCCTTTTCCTCCTGCTGGGT
TACCTTGTCCAGCATTGGTGTGATGGTTTGTCCCTGGTCTTATGGAACTT
TGTCATGCTGTGTTTGGTTGATGTCCCTGGGAAGCCTGCTCTTTTCTGAG
GTTAGGCATAGAGTGAGTGGATCTGATGAAGAGAGTAGATAGAGAATATG
TTCAAACTACAAAATAAAATTCTTTTTTTGACCCCCACCACTTCTTTATT
TCTTTATCTCTTAATGTATTCTTTTTCACTTTTTATCTCTATTTTTTCAC
TTCTCTAATATTTCTCTTATAATCCCCCCCCCCTTTCCATCTACCATTTA
CTTTTATTATTTCTCTTCTTTCTTTAACACTTCTATTTTTCATTTCCAAT
CTTCTTCTAATCGTCTTCATCATTACTTTTTTTTTTTCCCCCTCTCAGCT
TTTCTCCCCTTCTCACTTATTTTTTCAACATCCTAACTTATTGCCTCTTA
TACTATCTATTTCTTTATCCACTTCTCTTACTTCTAATTTCCTACTCTTC
TACTCTCCTCCTACCTTCATATATATTATATCTATACTCTTTCTTCTTAT
CTATTATTTCTCGTTTCTTGTTTTTTCTTACTTTCTTTGCTCCTCTGTAT
ATTTCTTATATATATCTCCTATCCTTTACCTACAAATCAGATACCCCTCA
CTCTTACTATCATAAATCTACGATTTTAATCCCTCCTTCTTTCGCTCTTC
TTTATGATTTTGTCCATTCATCGTTTTCCCTCCTCTCTCACCTTTTTTTT
ACTATCTT

NTCGAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGCTGATTATCTTAAACATAACCC
AGGAGGCTTTCCTGTGATCTCAGTTTTCTCCCTAGCAGTATTATTTTAGG
GAAAAAAAATCAGCATGTGTGAGGTTAGATTTCCAGATGGAGTAAAGAGC
GAGAAAAAAGAAGATTTAACTCCTCAAGAGGAGATTTTCAGTTGTTTGTC
TTTAGGACTGCTGGTGTTTATCCCTACATTCATATGCTTTACTTCGTCAT
CTACACAGGGACGTGTATAGAGTATATTACACATTTGCATGCAAATATGG
AATCTCATGGATCATTTTGAATCTGGAAATTTGTTTTTATTCATTCTGGT
TTTTTGTTTTTTTGTTTTGCCCTGTTTTACTTCTCAAGGATCGTCAGTAT
ATTCAGAACTTATTTTATATGCAGCAGTCCTGTGGATGCTAATTAAAAAC
AATCAGCCTCTGTATTCTTTTGACTTTCTTAGAAAATTAAACATAATTGG
GTTTTTCTTGTGTTTTGAAACTTCACACCCCTTATAAAGGACACATTCAT
CTTGCATTGATCCTTCCTCCTTCCCACATTCCTCAGTGTTTTGTGCCTAA
CAGGTGTTCAATAAATCTTGGTTGAAATATATTCTTCACTCTTTCAGAGT
GTAAAAGATGGTATCTTTCAGTTCATTGTCTGCTTTGAGGTCTCATTATT
TCC

Query= MSMg01no260_o15.g1 MSMg01no260_o15.g1 CHROMAT_FILE:
MSMg01no260_o15.g1 PHD_FILE: MSMg01no260_o15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:09 2005
         (541 letters)



>mm_chr6_107331303_107332244
          Length = 942

 Score =  994 bits (514), Expect = 0.0
 Identities = 535/542 (98%), Gaps = 1/542 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agctgattatcttaaacataacccaggaggctttcctgtgatctcagttttctccctagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agctgattatcttaaacataacccaggaggctttcctgtgatctcagttttctccctagc 260

                                                                       
Query: 61  agtattattttagggaaaaaaaa-tcagcatgtgtgaggttagatttccagatggagtaa 119
           ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtgttattttagggaaaaaaaaatcagcatgtgtgaggttagatttccagatggagtaa 320

                                                                       
Query: 120 agagcgagaaaaaagaagatttaactcctcaagaggagattttcagttgtttgtctttag 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agagcgagaaaaaagaagatttaactcctcaagaggagattttcagttgtttgtctttag 380

                                                                       
Query: 180 gactgctggtgtttatccctacattcatatgctttacttcgtcatctacacagggacgtg 239
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gactgctagtgtttatccctacattcatatgctttacttcgtcatctacacagggacgtg 440

                                                                       
Query: 240 tatagagtatattacacatttgcatgcaaatatggaatctcatggatcattttgaatctg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatagagtatattacacatttgcatgcaaatatggaatctcatggatcattttgaatctg 500

                                                                       
Query: 300 gaaatttgtttttattcattctggttttttgtttttttgttttgccctgttttacttctc 359
           ||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||
Sbjct: 501 gaaatttgtttttattcattctggttttttgtttttttgttttgttttgttttacttctc 560

                                                                       
Query: 360 aaggatcgtcagtatattcagaacttattttatatgcagcagtcctgtggatgctaatta 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaggatcgtcagtatattcagaacttattttatatgcagcagtcctgtggatgctaatta 620

                                                                       
Query: 420 aaaacaatcagcctctgtattcttttgactttcttagaaaattaaacataattgggtttt 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaaacaatcagcctctgtattcttttgactttcttagaaaattaaacataattgggtttt 680

                                                                       
Query: 480 tcttgtgttttgaaacttcacaccccttataaaggacacattcatcttgcattgatcctt 539
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 681 tcttgtgttttgaaacttcacaccccttataaaggacacattcatcttgtattgatcctt 740

             
Query: 540 cc 541
           ||
Sbjct: 741 cc 742


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 942
Length adjustment: 10
Effective length of query: 531
Effective length of database: 932
Effective search space:   494892
Effective search space used:   494892
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)