BAC Information

Click to search

BAC

Clone NameMSMg01-262C12
Chromosome6 (Build37)
Map Location 72,096,311 - 72,096,701
singlet/doubletsinglet
Overlap geneSt3gal5
Upstream geneFabp1, Smyd1, Krcc1, Gm1070, Cd8b1, LOC100042853, Cd8a, Rmnd5a, LOC100042863, Rnf103, Vps24, Jmjd1a, Ppia-ps6_731.1, LOC668029, LOC668034, Reep1, Mrpl35, Immt, Ptcd3, Rpo1-4, LOC668057
Downstream geneAtoh8, Sftpb, Usp39, 0610030E20Rik, Tmem150, 2500002L14Rik, Vamp5, Vamp8, Ggcx, Mat2a, Sh2d6, Capg, Rbed1, Retsat, Tgoln1, LOC100038890, Tcf3, Kcmf1, Tmsb10, Dnahc6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-262C12.T7 (MSMg01no262_c12.b1)MSMg01-262C12.TJ (MSMg01no262_c12.g1)
ACCAG404341AG404342
length734751
length of high quality
(start - end)
601 (60 - 660)407 (72 - 478)
definitionCHROMAT_FILE: MSMg01no262_c12.b1 PHD_FILE: MSMg01no262_c12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:44 2005CHROMAT_FILE: MSMg01no262_c12.g1 PHD_FILE: MSMg01no262_c12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCCATGGAACATAGTAAGACCTATTCTTGAAGGACTGATTCA
ATGGGTCTAAATCAGTCAGGAGACAGAATTATCCTCTGTAATAAATTCTC
AGGTGCCTCACATTTTATTGGCCAGTGGCTGATGAATTTAGTGTCCTGTT
CCAAGGATATCTCAAAGGCATCCTCTCTATATATTCAGATTTGTCTACTG
GTGCAAGAATGGTGGAGAGCCTTAGAGACTACCCTGCAGCTCCTGGGAAA
TGTAGTTCTCTTGAGTGTTTTTATTACCTAAGATTATCAACTTCCTTGCC
CTTACACCAACTTAATATGGCAAGGAAGACTGAAAACTGGAATCAGATGA
GATGTAACGAATTTTTCCTGCTGACCATGTCAGTGGGAAGACTTAGGGAA
GTAATATTTATGTTTGAACCAGGTTTGAAGGTTTGAGACCACGTGCGTTT
TCCTATCTGTAATATATACAAAAACTCCCTAGAGGCAGTTGAGAGGATTC
AAGTTACATCTGCTGAGCGTAGACAGCATCAAAGCCCAAGTCGGCCTTCA
GTGAGGGTCAGCGCAAGGTCAGCCATTCCCATAGAATGAGTGTGTTGTGC
AATCAGGCTCCATAGAGGACATTCTTATTTAACCCTCAAGATAGAGTTGG
AGATATAGCTGAACGTGTCACTGGTGCGGCAGCT
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAAAGTTTCTCGAGTACTTGGGGTTACAG
AGATGTGCCACTGTGCCCAGGATTTCTGAAATCCCATGAAAGTGTCCGCA
GCACAGTTGTGTCTAAACTTTCTTTCTCATGGCTACTTCCTCTTCCAGAC
CTTAAACACCGAATCCCTTGGTTACTAAACCAAGCTAATCCCTTGGTTAT
AAGTCAACTAAATGCCAGAGCGTGCCGCTGGGCCAGACTGTTTTCTCCTG
ATCAAAACTGAATTGTCATGGTTTACACACACACACACACACACATACAC
ACACACACACACACACACTCACTCACTCACTCACACTCTCACACACACAC
TCACACACACACACACACATTCACACACTCTCACACTCTCTCTCTCTCTC
TCACACACACACACACACTCACACACATATACACACACACACACACACAC
TCACACACACTGAGCCAGACTGTTCTCTCCTGATCAAAACTGAAGGGTAT
GCTTTACACACTTATACACACACATTCTTACCCCTCTCACATTCTCACCC
CCTCACACCCTTACATACTTCCCACATTCTCTCTCTCTCTCACATTTTCT
TTTTACACAACACTTATACTCTTTCCACCCTGTAATCAGACCGTTCCCCT
CCTGATTTATTACCGCACGAACTTTGTCCCTACATCTCACCCCATTTACT
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no262_c12.g1 MSMg01no262_c12.g1 CHROMAT_FILE:
MSMg01no262_c12.g1 PHD_FILE: MSMg01no262_c12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:44 2005
         (407 letters)



>mm_chr6_72096261_72097067
          Length = 807

 Score =  642 bits (332), Expect = 0.0
 Identities = 382/406 (94%), Gaps = 15/406 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaagtttctcgagtacttggggttacagagatgtgccactgtgcccaggatttctgaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaagtttctcgagtacttggggttacagagatgtgccactgtgcccaggatttctgaaa 382

                                                                       
Query: 61  tcccatgaaagtgtccgcagcacagttgtgtctaaactttctttctcatggctacttcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcccatgaaagtgtccgcagcacagttgtgtctaaactttctttctcatggctacttcct 322

                                                                       
Query: 121 cttccagaccttaaacaccgaatcccttggttactaaaccaagctaatcccttggttata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttccagaccttaaacaccgaatcccttggttactaaaccaagctaatcccttggttata 262

                                                                       
Query: 181 agtcaactaaatgccagagcgtgccgctgggccagactgttttctcctgatcaaaactga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtcaactaaatgccagagcgtgccgctgggccagactgttttctcctgatcaaaactga 202

                                                                       
Query: 241 attgtcatggtttacacacacacacacacacacatacacacacacacacacacacactca 300
           |  | ||||||||||||||||||||||||||    |||||||||||| ||| ||||||  
Sbjct: 201 a-gggcatggtttacacacacacacacacac----acacacacacactcactcacact-- 149

                                                                       
Query: 301 ctcactcactcacactctcacacacacactcacacacacacacacacattcacacactct 360
               ||||| ||||| ||||||||||| ||||||||||||||||||    ||||||||||
Sbjct: 148 ----ctcacacacacactcacacacactctcacacacacacacaca----cacacactct 97

                                                         
Query: 361 cacactctctctctctctctcacacacacacacacactcacacaca 406
           ||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 96  cacactctctctctctctctctcacacacacacacacacacacaca 51


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 161
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 807
Length adjustment: 9
Effective length of query: 398
Effective length of database: 798
Effective search space:   317604
Effective search space used:   317604
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)