Query= MSMg01no262_m19.b1 MSMg01no262_m19.b1 CHROMAT_FILE:
MSMg01no262_m19.b1 PHD_FILE: MSMg01no262_m19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:32 2005
(521 letters)
>mm_chr6_87096978_87097898
Length = 921
Score = 652 bits (337), Expect = 0.0
Identities = 440/518 (84%), Gaps = 71/518 (13%)
Strand = Plus / Minus
Query: 4 ggaattccacaagttccttcactttttctgtctctctctgtctctctgtgtgtctctctc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915 ggaattccacaagttccttcactttttctgtctctctctgtctctctgtgtgtctctctc 856
Query: 64 tgactctctccctctcccttcctctctcctttctcttctcttctcttctcttctcttctc 123
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 tgactctctccctctcccttcctctctcctttctcttctcttctcttctcttctcttct- 797
Query: 124 ttctcttctcttctcttctcttctcttctcttctcttctctctctgtctctctctctccc 183
||||||||
Sbjct: 796 -----------------------------------ttctctct----------------- 789
Query: 184 ttcctctctctctctctctctctttctctctctctctctccctccctccctccctccctc 243
|||||||| ||| ||| |||||||| || |||| ||| ||||| |||
Sbjct: 788 ---ctctctctgtctgtctgtctttctc-----------ccttccc-ccc-ccctctctc 745
Query: 244 cctccctctccctctctccccctctgtatcatgactccctgaagtagaatatcccagagt 303
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 cctcc--ctccctctctccccctctgtatcatgactccctgaagtagaatatcccagagt 687
Query: 304 caaacctgaaactttagatgctgaaactaggaaacagaaacttcagaccttcagcattag 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 caaacctgaaactttagatgctgaaactaggaaacagaaacttcagaccttcagcattag 627
Query: 364 actcgggccagcacaccacttccactgtatgcagttattccacactgctaaggcctctgg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 actcgggccagcacaccacttccactgtatgcagttattccacactgctaaggcctctgg 567
Query: 424 tttgaggaagagagatgcaggtggcatcagccttgagagggtggcaggatggaggaagga 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tttgaggaagagagatgcaggtggcatcagccttgagagggtggcaggatggaggaagga 507
Query: 484 aaagctgagggtagcatcttctcagacnaactgttacc 521
|||||||||||||||||||||||||| ||||||||||
Sbjct: 506 gaagctgagggtagcatcttctcagacaaactgttacc 469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space: 465521
Effective search space used: 465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no262_m19.g1 MSMg01no262_m19.g1 CHROMAT_FILE:
MSMg01no262_m19.g1 PHD_FILE: MSMg01no262_m19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:32 2005
(444 letters)
>mm_chr6_86948474_86949318
Length = 845
Score = 830 bits (429), Expect = 0.0
Identities = 441/445 (99%), Gaps = 1/445 (0%)
Strand = Plus / Plus
Query: 1 cagggcagcctagactgcacgacacactgtcccaaaagagaaaatccatccagggctaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagggcagcctagactgcacgacacactgtcccaaaagagaaaatccatccagggctaaa 260
Query: 61 gcctgaatgccaggctgcacttgcaatcacttagttgtgatagccttaaaatttgaaagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcctgaatgccaggctgcacttgcaatcacttagttgtgatagccttaaaatttgaaagt 320
Query: 121 cagggtttgggtgcacaaggcagcagcagaagatatgcttagcttgcacaatgccctggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagggtttgggtgcacaaggcagcagcagaagatatgcttagcttgcacaatgccctggg 380
Query: 181 gtctgtcgtcagtacacaaaaacaatacagttaaatctagaagtcttgacggtaatataa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtctgtcgtcagtacacaaaaacaatacagttaaatctagaagtcttgacggtaatataa 440
Query: 241 gaatgactatttttt-atgatatcaggtacttttaaccccagaacttgtgaggcaaggac 299
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 gaatgactatttttttatgatatcaggtacttttaaccccagaacttgcgaggcaaggac 500
Query: 300 aggtggatctctgtgagtttgaggccagcctgtctacataacaagttccaggccagccag 359
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct: 501 aggtggatctctgtgagtttgaagccagcctgtctacataacaagttccagtccagccag 560
Query: 360 tgagtgaaaccctgtctttagaggggggtagggggctatttttccctcttttcttcatag 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgagtgaaaccctgtctttagaggggggtagggggctatttttccctcttttcttcatag 620
Query: 420 cattctccacctgtttcaataacag 444
|||||||||||||||||||||||||
Sbjct: 621 cattctccacctgtttcaataacag 645
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 845
Length adjustment: 10
Effective length of query: 434
Effective length of database: 835
Effective search space: 362390
Effective search space used: 362390
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
