BAC Information

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BAC

Clone NameMSMg01-262N12
Chromosome6 (Build37)
Map Location 29,515,355 - 29,515,686
singlet/doubletsinglet
Overlap geneTnpo3
Upstream geneSnd1, Lrrc4, LOC100041367, Lep, Rbm28, D330027H18Rik, Impdh1, 2310016C08Rik, AI507611, BC048651, Calu, Opn1sw, 4921511K06Rik, Flnc, Atp6v1f, EG668210, Crim2, Irf5
Downstream geneTspan33, Smo, 4631427C17Rik, D330017J20Rik, 1700023L04Rik, 1700080G18Rik, Nrf1, Ube2h, Zc3hc1, 2410127E18Rik, 2700094F01Rik, 1700025E21Rik, Cpa2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-262N12.T7 (MSMg01no262_n12.b1)MSMg01-262N12.TJ (MSMg01no262_n12.g1)
ACCAG404834AG404835
length812729
length of high quality
(start - end)
117 (47 - 163)332 (74 - 405)
definitionCHROMAT_FILE: MSMg01no262_n12.b1 PHD_FILE: MSMg01no262_n12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:35 2005CHROMAT_FILE: MSMg01no262_n12.g1 PHD_FILE: MSMg01no262_n12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAGAGCGCGGA
ATTCCTAGATGCTCCGCAGGGGAATTAAGGTTGAGTTACTTCAGGACACG
CTGGGGGGCCAAGTCCTTGACTGCTCTCTGCTTCTACAGACCTAGCTTCG
CTCCAGGGCTTACATCAGACAGATCTTGGGAGGGGGTGGGGGCTCAGGAA
AACCCACGGGACCCGTCATTCTGAAGCGTCTTAGTATGACTGGCCTCAGG
TTTCTGTTCCTCTGACCTCTGTCCAGGACCACCCCTGCTTTACTTTTACC
CGTATTTTGGCCCCTTTTTTATCAGAGGCAGATCTCTTACCTCCCTGTGT
GCTTCCATTAACCCGGTCCCCCCCCCCCCGGATTAAATGATTCTGTATAC
CCATCTGTGTACATCCACCACCCCGACATCTGTATAGTACCAGATTTTAC
CGCTTACAAATGACAGTTAATCCCCAGATTAAAATAACTTTTTTTTTTTT
TGCCCACACTGGTCCTGTTCACCCCCTTTTTTCTTGCATTTATTTATTAA
TATAATAAATACTCCCCCCTTAAAAATTTTTTCGACGCACAGTTATATTA
TATTATTCATAATTATCAACGCAATACATCGCTTATCCTCACTCCCTCGA
TCCATTAGTTTGTGCGATTCACGTGACCTCGCCGTCCCTAGCACTTTACC
TTGTTTTTGTGTTCTTCACCCTCACTTCCTCGTCTTTATTTGATACTATT
CCTCCTAATATTATCTTATTTTTTGTTGGGGCTTGGGCGCCCTACCGGAG
GGTGGGCGTGTN
CATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTTTAAAAGATTAGCAACTGTTTTAA
AAACGTTTCTTGTACATATTTACAATTCAGACTGATTTTTACATTGATAT
AACTCAAAATTCATTTCTTAGCAGCAAACATGAGTATGTTTAATATGACT
GTGTTGCCTCTACTCCAAATCTATAACTATGCTGTACAAATATATGGCAT
TCAAGCAATGATATAACTTGATAGGCTTAAGTTTTGCTAAGAAAAGAATG
TATGAACATTCCCCCCTTCTCAATCACTAAGTACATTACAGCTGATAACC
CCAAGTAACGTTATAGAGAGACTGTTACTAACCTTTTAGCAAACCCACAG
CAGCTTCGTGAGACAACATGAAAGAATCAAGGTAGTGGGCAATTTCTAGG
ACTCCATTAAAGTGCTGAGCCTTATGATCGCGACAAACGGAACAAATGTT
ATGAATGGCTTTGGCTGCAGCAGAAGCCAGAGGCTTTTCACACTGGCCTT
TCATCAAATATCCCAATACAGGGTCTAAGACATAAAGCACATACATATTT
TATATATATATATGAAAATCCCATGTTGTAAGTATATATATTCCCGACCA
GTACAAACTTTGCCTGCTTAAAGGCTTACTCTGCTTTTCCTAATCCAACC
CATCAAATGATATTATATCCACACTTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no262_n12.g1 MSMg01no262_n12.g1 CHROMAT_FILE:
MSMg01no262_n12.g1 PHD_FILE: MSMg01no262_n12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:35 2005
         (332 letters)



>mm_chr6_29515155_29515886
          Length = 732

 Score =  619 bits (320), Expect = 0.0
 Identities = 329/332 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttttaaaagattagcaactgttttaaaaacgtttcttgtacatatttacaattcagact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 tttttaaaagattagcaactgttttaaaaacgtttcttgtacatatttagaattcagact 260

                                                                       
Query: 61  gatttttacattgatataactcaaaattcatttcttagcagcaaacatgagtatgtttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatttttacattgatataactcaaaattcatttcttagcagcaaacatgagtatgtttaa 320

                                                                       
Query: 121 tatgactgtgttgcctctactccaaatctataactatgctgtacaaatatatggcattca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatgactgtgttgcctctactccaaatctataactatgctgtacaaatatatggcattca 380

                                                                       
Query: 181 agcaatgatataacttgataggcttaagttttgctaagaaaagaatgtatgaacattccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcaatgatataacttgataggcttaagttttgctaagaaaagaatgtatgaacattccc 440

                                                                       
Query: 241 cccttctcaatcactaagtacattacagctgataaccccaagtaacgttatagagagact 300
           |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 cccttcacaatcactaagtacattacagctgataaccccaagtaacggtatagagagact 500

                                           
Query: 301 gttactaaccttttagcaaacccacagcagct 332
           ||||||||||||||||||||||||||||||||
Sbjct: 501 gttactaaccttttagcaaacccacagcagct 532


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 732
Length adjustment: 9
Effective length of query: 323
Effective length of database: 723
Effective search space:   233529
Effective search space used:   233529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)