Query= MSMg01no262_o02.b1 MSMg01no262_o02.b1 CHROMAT_FILE:
MSMg01no262_o02.b1 PHD_FILE: MSMg01no262_o02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:38 2005
(601 letters)
>mm_chr6_64215073_64216071
Length = 999
Score = 1081 bits (559), Expect = 0.0
Identities = 587/597 (98%), Gaps = 2/597 (0%)
Strand = Plus / Minus
Query: 5 gaattccacattaagtctagtgtaaaatgctagcatatacataattaccatgtctttgtg 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gaattccacattaagtatagtgtaaaatgctagcatatacataattaccatgtctttgtg 542
Query: 65 gacttgtttctttgtctttttttttaaaccatatgttttacatattttccttatgcatcc 124
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gacttgtttccttgtc--attttttaaaccatatgttttacatattttccttatgcatcc 484
Query: 125 attgtcaaggaatagctagaaaaatgcacatctctagaaactcaagagaaggagcaagac 184
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 attgtcaagtaatagctagaaaaatgcacatctctagaaactcaagagaaggagcaagac 424
Query: 185 agatgttgaaagggaggcccagactaactgatcacaacaatgtgttatagattcagcaat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 agatgttgaaagggaggcccagactaactgatcacaacaatgtgttatagattcagcaat 364
Query: 245 gaacagtgtagtgaacactacacgatttgaagctgtccatccctcaactcaagaacaata 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gaacagtgtagtgaacactacacgatttgaagctgtccatccctcaactcaagaacaata 304
Query: 305 gcatgtaggcacatgtgcatctggtctagctcggccttgacacagtagctattggtagtc 364
||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 303 tcatgtaggcacatgtgcatctggtctatctcggccttgacacagtaactattggtagtc 244
Query: 365 tgtcctcacatctagaacctcagccactagcagaatctgcctctactattctcatttatc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 tgtcctcacatctagaacctcagccactagcagaatctgcctctactattctcatttatc 184
Query: 425 catctagaaccacacattaaagagtaggatatatcaaagcaaccatatacacaatataaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 catctagaaccacacattaaagagtaggatatatcaaagcaaccatatacacaatataaa 124
Query: 485 ttagaaagtcatgaccactctgaaatccctaggaaataaaggttcagaaaaaactaagaa 544
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 ttagaaagtcatgaccactctgaaatccctaggaaataaaggttcagaaaaaactaagac 64
Query: 545 cttaattttgtatctcagtttgagtcttggtacagaggcattctataatcattgggg 601
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 cttaattttgtatctcagtttgagtcttggtacagaggcattctataatcattgggg 7
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 999
Length adjustment: 10
Effective length of query: 591
Effective length of database: 989
Effective search space: 584499
Effective search space used: 584499
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no262_o02.g1 MSMg01no262_o02.g1 CHROMAT_FILE:
MSMg01no262_o02.g1 PHD_FILE: MSMg01no262_o02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:38 2005
(666 letters)
>mm_chr6_64163934_64164999
Length = 1066
Score = 1234 bits (638), Expect = 0.0
Identities = 659/666 (98%)
Strand = Plus / Plus
Query: 1 acatgaagacatcactgaccaggatagggagtttataatatggttgatttgtgtttcctt 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acatgaagacatcactgatcaggatagggagtttataatatggttgatttgtgtttcctt 260
Query: 61 tgggaaatgtaggattcatatgtgatttgagaagcccccatacaatatttccataatgaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggaaatgtaggattcatatgtgatttgagaagcccccatacaatatttccataatgaa 320
Query: 121 tgtactcattgaacattgtccccaacagtctacagagcacttttttgtccatatgcttaa 180
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 321 tgtactcattgaacattgtccccaacagtctacagagtactcttttgtccatatgcttaa 380
Query: 181 caagacttgttacagattgctgatctgataatagccatttctgtgtgtaaagagacacaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caagacttgttacagattgctgatctgataatagccatttctgtgtgtaaagagacacaa 440
Query: 241 tattatcattttaatttgtgtttcccttggccccttttcaactcagagcttcagtgcact 300
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 441 tattatcattttaatttgtgtttcccttggccctttttcaactcagagcttcagtgcact 500
Query: 301 atttcctctgagatacccctctaaatttccctgcagtcaaatctcttttcccagcccctt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atttcctctgagatacccctctaaatttccctgcagtcaaatctcttttcccagcccctt 560
Query: 361 ccttctctctagttttattcttttactctaagtacagcccagaggtgatcagtgtgtttg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccttctctctagttttattcttttactctaagtacagcccagaggtgatcagtgtgtttg 620
Query: 421 gtatcagcatcagagactttcaaagattaggatacagtctgggtcaaaatcaaaatgctg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtatcagcatcagagactttcaaagattaggatacagtctgggtcaaaatcaaaatgctg 680
Query: 481 catacctgttacaccacttactcctctagtgatgaattcaaaaagaggagtactactaag 540
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 681 catacctgttacaccacttactcctctagtgaagaattaaaaaagaggagtactactaag 740
Query: 541 ttttggtaagttacctctaagaagtgcactgactatgatgctgtcacgggtctttctggt 600
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttttggtaagttacctccaagaagtgcactgactatgatgctgtcacgggtctttctggt 800
Query: 601 acccctgccctcagcacatcagcaccatctcaggagtgtggtcccagccagcatcttcag 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 acccctgccctcagcacatcagcaccatctcaggagtgtggtcccagccagcatcttcag 860
Query: 661 tctatc 666
||||||
Sbjct: 861 tctatc 866
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space: 692736
Effective search space used: 692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
