Query= MSMg01no263_j08.b1 MSMg01no263_j08.b1 CHROMAT_FILE:
MSMg01no263_j08.b1 PHD_FILE: MSMg01no263_j08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:32 2005
(551 letters)
>mm_chr6_127185404_127186355
Length = 952
Score = 621 bits (321), Expect = 0.0
Identities = 348/357 (97%), Gaps = 1/357 (0%)
Strand = Plus / Minus
Query: 1 gagaattggttcccatggattgtcctctgattactacactcaataaataaagtgtaaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 gagaattggttcccatggattgtcctctgattactacactcaataaataaagtgtaaaaa 298
Query: 61 caaaacaaaaagg-aaaaaagaaaaagaaagaaactgacccaaaccccaaacagagaatt 119
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 caaaacaaaaaggaaaaaaagaaaaagaaagaaactgacccaaaccccaaacagagaatt 238
Query: 120 tcctgagagatggggcactggacatgtctgtggtgccatgctggctatttttatgtcaac 179
||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 237 tcctgagagatggagcactggacatgtctgtggtgccgtgctggctagttttatgtcaac 178
Query: 180 ttgacacaaactaaagttatcagagagaagggagcctcaactgagaaaatgctttcttaa 239
||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 177 ttgacacaaactaaagtcaccagagagaagggagcctcaactgagaaaatgctttcttag 118
Query: 240 gagtgggctgtaggcaagcctgcagatcattttcttaatcagtagttgacggtagagggt 299
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 117 gggtgggctgtaggcaagcctgcagatcattttcttaatcagtagttgacgggagagggt 58
Query: 300 ccagcccattgtggctaggtccactcctgacctgatggtcctgggtttaataagaaa 356
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57 ccagcccattgtggctaggtccactcctgacctgatggtcctgggtttaataagaaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 952
Length adjustment: 10
Effective length of query: 541
Effective length of database: 942
Effective search space: 509622
Effective search space used: 509622
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no263_j08.g1 MSMg01no263_j08.g1 CHROMAT_FILE:
MSMg01no263_j08.g1 PHD_FILE: MSMg01no263_j08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:32 2005
(560 letters)
>mm_chr6_127001670_127002629
Length = 960
Score = 1052 bits (544), Expect = 0.0
Identities = 556/560 (99%)
Strand = Plus / Plus
Query: 1 actgctaacaaggcagtggggaaagacagagaaagctggagcgagagaaggtgggagtag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgctaacaaggcagtggggaaagacagagaaagctggagcgagagaaggtgggagtag 260
Query: 61 ccagaaagaccccgttcactctttctactccctcacaagtttttgcttcccagtccaact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccagaaagaccccgttcactctttctactccctcacaagtttttgcttcccagtccaact 320
Query: 121 gaatccgtgcctgaacggagacgttttctgagaaatgatccgcatccctgtcctccttcc 180
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaatccgtgcctgaatggagacgttttctgagaaatgatccgcatccctgtcctccttcc 380
Query: 181 tggaccatctttggcagatgctggccggaaacaagcattctcttgtctttacgggaatgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggaccatctttggcagatgctggccggaaacaagcattctcttgtctttacgggaatgg 440
Query: 241 catccttgctgctcttgctggaatcagcatgtcagttctgcctctttacccatctccctc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catccttgctgctcttgctggaatcagcatgtcagttctgcctctttacccatctccctc 500
Query: 301 agtgggcagcaagcacttactcagtccattgtccagcaaacattgcttatgagacctctt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtgggcagcaagcacttactcagtccattgtccagcaaacattgcttatgagacctctt 560
Query: 361 gtgtgctctgataagtattcgtacctcagtgatggttatggttaccaccacttagcttaa 420
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtgtgctctgataagtattggtacctcagtgatggttatggttaccaccacttagcttaa 620
Query: 421 gccctggccctgtagtgggggtcagtcataccagaaagacaacacacatggaggggaatt 480
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 accctggccctgtggtgggggtcagtcataccagaaagacaacacacatggaggggaatt 680
Query: 481 ttgaagaccaataagaggatgcttccagaaaacaacttagtgtagaataatatggtttta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttgaagaccaataagaggatgcttccagaaaacaacttagtgtagaataatatggtttta 740
Query: 541 aaggatattttgattgtatg 560
||||||||||||||||||||
Sbjct: 741 aaggatattttgattgtatg 760
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space: 522500
Effective search space used: 522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
