Query= MSMg01no263_j19.b1 MSMg01no263_j19.b1 CHROMAT_FILE:
MSMg01no263_j19.b1 PHD_FILE: MSMg01no263_j19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:34 2005
(322 letters)
>mm_chr6_113287113_113287835
Length = 723
Score = 600 bits (310), Expect = e-176
Identities = 316/318 (99%), Gaps = 1/318 (0%)
Strand = Plus / Plus
Query: 5 gaattcatgtcagctttaaaaatactcgttggcttggagagcattttggggcagcgccaa 64
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 205 gaattcatgtcagctttaaaaatactcgttggcttggagagcattttggggcagtgccaa 264
Query: 65 gagtcagacgggactcacaggaagtcctctgtcttgctcacttctgtctggcagtactgg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gagtcagacgggactcacaggaagtcctctgtcttgctcacttctgtctggcagtactgg 324
Query: 125 ccttccttctgtccttgaacatgctgtcatagggtcttcatgtttgacatcctccccaca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccttccttctgtccttgaacatgctgtcatagggtcttcatgtttgacatcctccccaca 384
Query: 185 cctaaaccg-atcacacctaaactggctcaaaagccactcagattttaccatcacaaagg 243
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cctaaaccggatcacacctaaactggctcaaaagccactcagattttaccatcacaaagg 444
Query: 244 gcctttgactatctgaagtgacatctatccacatctccctactcctgtttgattttatct 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcctttgactatctgaagtgacatctatccacatctccctactcctgtttgattttatct 504
Query: 304 tcacagtgactttgacca 321
||||||||||||||||||
Sbjct: 505 tcacagtgactttgacca 522
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 723
Length adjustment: 9
Effective length of query: 313
Effective length of database: 714
Effective search space: 223482
Effective search space used: 223482
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no263_j19.g1 MSMg01no263_j19.g1 CHROMAT_FILE:
MSMg01no263_j19.g1 PHD_FILE: MSMg01no263_j19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:35 2005
(603 letters)
>mm_chr6_113437580_113438582
Length = 1003
Score = 1135 bits (587), Expect = 0.0
Identities = 599/603 (99%)
Strand = Plus / Minus
Query: 1 acttgggcatgtgtcccgggaactccttgaccaaggaaggccctttgggcagaggagtaa 60
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 803 acttgggcatgtgtcctgggaaccccttgaccaaggaaggccctttgggcagaggagtaa 744
Query: 61 agaggctcagtgtgagggcctggtacccaggggcaactcctcagatctggattgggaagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 agaggctcagtgtgagggcctggtacccaggggcaactcctcagatctggattgggaagg 684
Query: 121 ctccaaaccaagctgccatgcaactgcttcttggccaagtcaaagccacatcaccggggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ctccaaaccaagctgccatgcaactgcttcttggccaagtcaaagccacatcaccggggc 624
Query: 181 atatctgtaacccctcccactcctcacctgtgaaaccaccagttttccaccagctcctcg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 atatctgtaacccctcccactcctcacctgtgaaaccaccagttttccaccagctcctcg 564
Query: 241 ctcagctcgagcaggcggtggcactcgaagtctgacctgttgcacacgccctccagcacc 300
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 563 ctcagctcgagcaggcggtggcactcgaagtctgacctgctgcacacgccctccagcacc 504
Query: 301 tccaccaggcgggtctcactgagtacacaggacagggtgataagaacatggtctgcccac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tccaccaggcgggtctcactgagtacacaggacagggtgataagaacatggtctgcccac 444
Query: 361 cggctcctcaggtcgctctccaccccctgacccccatacgtgacactaccaaggaagggc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 cggctcctcaggtcgctctccaccccctgacccccatacgtgacactaccaaggaagggc 384
Query: 421 catggagcattagtgacagccaggctattggctctggaaatcagacagacctaggtccga 480
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 383 catggagcattagtgacagccaggctaatggctctggaaatcagacagacctaggtccga 324
Query: 481 gacgaggctgtctgtgtgatttgggcacgtcatgaagtcttgttttcgtttctcacccct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gacgaggctgtctgtgtgatttgggcacgtcatgaagtcttgttttcgtttctcacccct 264
Query: 541 gaccccttggttgtaatcaggttctcactacttcaacaaggatggcctagaactctccta 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gaccccttggttgtaatcaggttctcactacttcaacaaggatggcctagaactctccta 204
Query: 601 ctg 603
|||
Sbjct: 203 ctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space: 588849
Effective search space used: 588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
