BAC Information

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BAC

Clone NameMSMg01-265B18
Chromosome6 (Build37)
Map Location 102,189,764 - 102,189,946
singlet/doubletsinglet
Overlap geneCntn3
Upstream genePdzrn3, EG666084, EG666123
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265B18.T7 (MSMg01no265_b18.b1)MSMg01-265B18.TJ (MSMg01no265_b18.g1)
ACCAG406467AG406468
length821759
length of high quality
(start - end)		189 (47 - 235)288 (76 - 363)
definitionCHROMAT_FILE: MSMg01no265_b18.b1 PHD_FILE: MSMg01no265_b18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:30 2005CHROMAT_FILE: MSMg01no265_b18.g1 PHD_FILE: MSMg01no265_b18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTCCCAAATTGGATAATGGGTCGTTATGAAAGGAACTGGAGGT
ATTTATTCTTGTCAGTCCTCTTTACAACCTGAGGCAGTATGATCAGGGAT
TCAGAATGAAGGAGGGAGCTAATTTAAGAATGTTTGCATGTGTTTTTTCT
GTTGTTATGAAATGTGGGAGAGATAATTTTCAAGTTGTTTATTTTTTTTT
TGTTTTTTTTTTTTTTTATAACTACTATTTTTTATTAAATTCTTTTCTCT
TTTTTCCTTTATTTCCCCCAACTTTTTTTTTTTTTCCTACAACCAACCCA
AAAAAAGAAATATATTTTTTTAGTAGTTTCCCCCCCCCCCCCCCCAATAT
ATTTTTTTATTTTTTATAATTTTTTTTCCCCCCCCCTCTTTAAAAAAAAA
AAAAAAAATTTTTGTGGGTGTTTTTTTCTCCCTCTGTTTTTTCCAATTCT
TATTATCCTTATTTTCACTCCTCCTTCTTCTCCTTTATTATTTTTTATAT
TCTTTTATGTAAATCCATTTATTATTCTTATTTTTTATTTTTTTTTATCT
TCACTATTTTATTTACTAAAATTTTATTTTCTGAACTTTCTTTTTATATA
AATTTCATATATTTTTTTTTACTTATTCCACTCTTTCCTTATATTTTGTT
TTTATATCTCTTTTTTTCTTATTTTTTCTTTTCCACACTTATTTTCTCTC
TATTTCTTTATTACTTTTTTTACTTTTATTTTAATAACAAATCTCTCATA
TAATTTTCTTATCTATCAACT

CGAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTTGTTTCTCCATCTAAGGGTATT
GTAAGTTTGGCTGAGTATAGTATCCTGGGTTGGCATTTGTGTTCTCTTAG
TGTCTGTATAACATCTGTCCAAGCTCTTCGTGCTTTCATAGTCTCTGGTG
AAAAGTCTGGTGTAATTCTGATAGGCTTGCCTTTATATGTTACTTGACCC
TTTTCCCTTACTGCTTTTAACATTCTATCTTTATTTAGTGCATTTGTTGT
TCTGATTATTATGTGTCAGGAGGAATTTCTTTTCTGATCCAGTCTATTTG
GAGTTCTGTAGGCTTCTTTTATGTTCCCCCCCACCCCTTTCTTTAAGTTT
TGGAAGTTTTCTTCTACCCCCCCCCCCAAAAAAAAAAAAAAACCTTTGAG
TTGAAAATCTTCATTCTCATCCATTCCTATTATCCGTAAGTTTGGACTTC
TCATTGNGCCCTGCTATTTTGTGAAAGTTTTTTATTCACAATTTTCTTCC
TCTATGTTTTTTATTTTATATTTCTCTACTATCTTATTTAATAATACATT
CTACTATTTTTTCTTCCTCTTCCTTTTATTCCTAATTTCCCCTCACAATT
ACTTCAACCAAACATTATCATTTCACTTATTTTATTCTCACATTTTTTAT
CCCCCTTTTTTATTTTATTTTTTTTTCTTTTATCCCCATCTTTTTTTTAT
TTTTTTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_b18.b1 MSMg01no265_b18.b1 CHROMAT_FILE:
MSMg01no265_b18.b1 PHD_FILE: MSMg01no265_b18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:30 2005
         (189 letters)



>mm_chr6_102189558_102190146
          Length = 589

 Score =  331 bits (171), Expect = 2e-95
 Identities = 180/183 (98%)
 Strand = Plus / Plus

                                                                       
Query: 7   attctttcccaaattggataatgggtcgttatgaaaggaactggaggtatttattcttgt 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 attctttcccaaattggataatgggtcgttatgaaaggaactggaggtatttattcttgt 266

                                                                       
Query: 67  cagtcctctttacaacctgaggcagtatgatcagggattcagaatgaaggagggagctaa 126
           ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 267 cagtcctctttacaacctgaggcaggatgatcagggattaagaatgaaggagggagctaa 326

                                                                       
Query: 127 tttaagaatgtttgcatgtgttttttctgttgttatgaaatgtgggagagataattttca 186
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tttaagaatgtttgcatgagttttttctgttgttatgaaatgtgggagagataattttca 386

              
Query: 187 agt 189
           |||
Sbjct: 387 agt 389


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 589
Length adjustment: 8
Effective length of query: 181
Effective length of database: 581
Effective search space:   105161
Effective search space used:   105161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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