BAC Information

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BAC

Clone NameMSMg01-265L15
Chromosome6 (Build37)
Map Location 12,364,038 - 12,364,233
singlet/doubletsinglet
Overlap geneThsd7a
Upstream geneNdufa4, Phf14, LOC100040844, EG625347, LOC435879
Downstream geneLOC667735, LOC384350, Tmem106b, Gm467, Gm725, 1700016P04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265L15.T7 (MSMg01no265_l15.b1)MSMg01-265L15.TJ (MSMg01no265_l15.g1)
ACCAG406909AG406910
length842760
length of high quality
(start - end)
199 (45 - 243)288 (77 - 364)
definitionCHROMAT_FILE: MSMg01no265_l15.b1 PHD_FILE: MSMg01no265_l15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:19 2005CHROMAT_FILE: MSMg01no265_l15.g1 PHD_FILE: MSMg01no265_l15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTAACTTAAACCAGGTAAAGGAAGAGTCTGCTGAAGAGAGCTCTG
TGGNGAAGTGTGTGCCCTGCAAAGATGAGGGCCATCCCCAAAACTCTTGA
AAAGGGATCTAGGTGTTGTGGAGTTAGCCAGTATCCCAGAGATAAGGAGG
CAGAGTCAGATGGATGTCCGTGGCCTCCTCGATGGCCATCATCNCCTAAN
CATTGAGCATTANTCTCANTGAAAGCTTGTNCCACCCCCAGNTTAAACTG
CTCTGNNATTANTCCTNNNNNACTTTTTTTTTTCCNNACCNNACCNACCT
GAAGGNTTGNNNNNTTTTTTTTTTTTTTCCCCNNCCCCCCCCCTNTTTTA
ATAAGGGACAGTCTCTTCCCCCNNNNNNNNNCCNNNAAAAAAAAAAATCC
CGGGGGGGGGGGGAGAGAAAAAACTANNNNNNNNNNNNNCCCCGCGAGAA
GAGGGAGTTATTTTTCCCCTGGGAAANNNCTATTTNTCTAATATTAAAAA
AAAAAAAAAAAGAAGCTGGCTGGGNNNNNTTNNNTNNNNNNNNAAAAAAA
AAAGAGAGCCTTNNNNNNNNNNNTTTTNAATATTATATANNNNNNNNNNN
NNNNNNNNNNNNNNTNNNNNNNNTTNNNTNNNNTNTNNNNNNNNNNNNNN
NTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNNNNNNNNNNNTN
TTTNTNNTTCTTATTTTTCATCTCCNTCTTTTTTTTTTTNTTTTTCTTTN
TTTTTTTTTTTTTTNNTTTTTTATTACAAGTGAGAGAGAAAG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACGCAGTTGAATCCTTCTCAACAG
TCTGTTTTACGGGAACACTTATGACCACGACCCGCAGTTCTGGTTCCGGA
ATGAGGGATCTTCCTTGCGCCGGTGATGGTAACCGTCCCATCCCGAGTTT
TCTCGTCCCGGGTTTTCTCGTCCCAGGTCTTCTCGTCCCAGGTCTTCTCG
TCCCGTCCCGAGTTTTCTTGTCCCGGGTTTTTTCGTCCCGGGTTTCTTCG
TCCCGTCCCGAGTTTTCGGCACCAACTCTTACACATCTTCAGGAGCCAGA
GAGCAAGAGAGCATGAGAGCTAGATATCCCNAGCGCCCACCTTGAAAGCA
AGAAAAAGAACAAGAACAAGACAGCAAGAGAGAGAAAACAAGAGAGAATA
AGAATGGCAAAACCCCGTCCCTTTTAAGGAGAATTATCCTCCGCCTAGGA
CGTATTACTCCCTGATTGGCTGCAGCCCATCGGCTCAGTTGTCATCACGA
GAAAGGCAGAACACATGGCGGGAAAACTGCCCCTGCACGTGTGCAGATTA
TGTTTACTACTTAGAACACAGCTGTCAGCGCCATCTTGTAATGGCAAATG
TGAGGGCGGCTCCCAACACTCCCCTTCCTTCCTTCTTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTTTTTCTTTCTCTCCTTTTT
TCCCAGCGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_l15.b1 MSMg01no265_l15.b1 CHROMAT_FILE:
MSMg01no265_l15.b1 PHD_FILE: MSMg01no265_l15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:19 2005
         (199 letters)



>mm_chr6_12363835_12364433
          Length = 599

 Score =  350 bits (181), Expect = e-101
 Identities = 192/196 (97%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctttaacttaaaccaggtaaaggaagagtctgctgaagagagctctgtggngaa 63
           ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 399 ggaattctttaacttaaaccaggtaaaggaagagtttgctgaagagagctctgtggggaa 340

                                                                       
Query: 64  gtgtgtgccctgcaaagatgagggccatccccaaaactcttgaaaagggatctaggtgtt 123
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 339 gtgtgtgccctgcaaagatgagggccatccccaaaactcttgaaaaggaatctaggtgtt 280

                                                                       
Query: 124 gtggagttagccagtatcccagagataaggaggcagagtcagatggatgtccgtggcctc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 279 gtggagttagccagtatcccagagataaggaggcagagtcagatggatgtccgtggccta 220

                           
Query: 184 ctcgatggccatcatc 199
           ||||||||||||||||
Sbjct: 219 ctcgatggccatcatc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 199
Length of database: 599
Length adjustment: 8
Effective length of query: 191
Effective length of database: 591
Effective search space:   112881
Effective search space used:   112881
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)