BAC Information

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BAC

Clone NameMSMg01-265O19
Chromosome6 (Build37)
Map Location 120,986,621 - 121,062,043
singlet/doubletdoublet
Overlap geneMical3, LOC100043793
Upstream geneWnk1, Ninj2, B4galnt3, Ccdc77, Jarid1a, Il17ra, Cecr6, Cecr5, 1700072O05Rik, Cecr2, Slc25a18, Atp6v1e1, Bcl2l13, Bid
Downstream geneMinpp1-ps, Pex26, Tuba8, Usp18, Slc6a13, Slc6a12, Iqsec3, LOC100043486, A2m, EG640530, Mug1, Mug4, Mug2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265O19.T7 (MSMg01no265_o19.b1)MSMg01-265O19.TJ (MSMg01no265_o19.g1)
ACCAG407048AG407049
length769767
length of high quality
(start - end)		318 (45 - 362)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no265_o19.b1 PHD_FILE: MSMg01no265_o19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:34 2005CHROMAT_FILE: MSMg01no265_o19.g1 PHD_FILE: MSMg01no265_o19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,061,733 - 121,062,043)(120,986,621 - 120,986,907)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTTAATTTGAGATTTCCATCTTTGGTCCCTGACTCTGTTGACGAT
GGTGCCCCTGCTTGCAGGAAGAGCTGCATGGCAGGAGGAACCCGTGGACC
TCATGGCGAATGGGAAGAGGCCAGAGGACAAGATAACTCCTAATGATCTA
CTTCAGCCAGTTAGGCCCCGCCTCCTAAAGTTTCCAGCACCTCCCAAAAT
AGCAAGCCAGCTGGGGCCCCAGCATCCAATACACGAGCCTTTCTGAAGGA
CACTACTTATCTAAACCATAACAGTTAATAAACACCAGCAGGAGCAGCTG
CTGGGTACTATTATGACGTCCGCCCCCACAAAACACGGAAAATTAGGGTC
ACAGGGACACACCGCCACAAATGGGAGTTCTTAGATGTCAGTAGCTACAA
TTAGTCCATTCCAGGGGCTACCTAGCAGATTCGGACTTTCTCCGTGTCTT
TGGACAATAGTTGGAAGATGGGTTGTCTGGCTGCAAGAGGAACTCTCAGG
AAAAGCATCCTGGCTATCTTACAGTTTGGAAGCTGAGGAGTGCAGGCTGA
AAACTTCTGAAATAAAGCAGAGGGCCTGTGAATTTGATCCCCAGAACCCA
CAGCAGGAGAGAACTGATTCTTAAAAGCTGTCCTCTGAACTTCACACGCG
CCCTCCAGCGCCACACGACACTCTATGCAAACCGAGTTGGAATTGGTCTG
AACCAATCGAGCTTTCTGG

ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACGGGACTGGGCCATGAGGGGATC
CACAAGGCGGGGCCTGAGTCTCGAGGAAAGGGCTGCAGAGCACCGGGCAG
GAAAGCTGTCCAGGTGCAGACCCTCCCTTCCTGCACAGTGCATGGAAGCC
AGGAGGTTTGTTTTCTTTTGTGCTGCCCTACAACTCACTACACACCAACA
ATGACCAATAGTAAACAAAGACACCAGAATGGGAAAAGGAGAGGCCAGTC
TACGAGAGGGGATGGGTTGTTTACCAGGTAAAACCTCTGTGATAACCAAG
GATGCTTGAGGAATCTCCTAGATTTCTAACAGGACAGATGCCTAACTGCA
GACAGACAAATACTGAACGCCTATTCAGTTAACCTGAAAAGTATACAGAA
TGGAAAGAAACCAAGCTCTAGAAAACACAATGAAGATACTTTTGTTTTGT
TTTGTTTTACTACAGCAAAATATCTATATTTATGCCTAACTCAATCCATC
AGAAAACAGTCACACACAAGCCCATTCCTGACTAGCAATGGTTGCTGGTG
ATCTCAGATGACCTCAGGGAAGGCCAACAGTGACACCAAAGGTCAGGGTG
TCAACCAAACCCTGCCCATGCAGCAGCAAACCTAGCTTGTACGGNAGGGG
GAGGTGCTGTTGAGGAATTGGCAAAATGTACACTTACTAGCCACCCCATA
GCACCCGTGTCCCTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_o19.b1 MSMg01no265_o19.b1 CHROMAT_FILE:
MSMg01no265_o19.b1 PHD_FILE: MSMg01no265_o19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:34 2005
         (318 letters)



>mm_chr6_121061733_121062450
          Length = 718

 Score =  594 bits (307), Expect = e-174
 Identities = 310/311 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttttaatttgagatttccatctttggtccctgactctgttgacgatggtgccc 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ggaattcttttaattcgagatttccatctttggtccctgactctgttgacgatggtgccc 252

                                                                       
Query: 64  ctgcttgcaggaagagctgcatggcaggaggaacccgtggacctcatggcgaatgggaag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ctgcttgcaggaagagctgcatggcaggaggaacccgtggacctcatggcgaatgggaag 192

                                                                       
Query: 124 aggccagaggacaagataactcctaatgatctacttcagccagttaggccccgcctccta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 aggccagaggacaagataactcctaatgatctacttcagccagttaggccccgcctccta 132

                                                                       
Query: 184 aagtttccagcacctcccaaaatagcaagccagctggggccccagcatccaatacacgag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 aagtttccagcacctcccaaaatagcaagccagctggggccccagcatccaatacacgag 72

                                                                       
Query: 244 cctttctgaaggacactacttatctaaaccataacagttaataaacaccagcaggagcag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71  cctttctgaaggacactacttatctaaaccataacagttaataaacaccagcaggagcag 12

                      
Query: 304 ctgctgggtac 314
           |||||||||||
Sbjct: 11  ctgctgggtac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no265_o19.g1 MSMg01no265_o19.g1 CHROMAT_FILE:
MSMg01no265_o19.g1 PHD_FILE: MSMg01no265_o19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:34 2005
         (287 letters)



>mm_chr6_120986421_120987107
          Length = 687

 Score =  540 bits (279), Expect = e-158
 Identities = 285/287 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acgggactgggccatgaggggatccacaaggcggggcctgagtctcgaggaaagggctgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acgggactgggccatgaggggatccacaaggcggggcctgagtctcgaggaaagggctgc 260

                                                                       
Query: 61  agagcaccgggcaggaaagctgtccaggtgcagaccctcccttcctgcacagtgcatgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agagcaccgggcaggaaagctgtccaggtgcagaccctcccttcctgcacagtgcatgga 320

                                                                       
Query: 121 agccaggaggtttgttttcttttgtgctgccctacaactcactacacaccaacaatgacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 agccaggaggtttgttttcttttgtgctgccctacaactcactacacgccaacaatgacc 380

                                                                       
Query: 181 aatagtaaacaaagacaccagaatgggaaaaggagaggccagtctacgagaggggatggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatagtaaacaaagacaccagaatgggaaaaggagaggccagtctacgagaggggatggg 440

                                                          
Query: 241 ttgtttaccaggtaaaacctctgtgataaccaaggatgcttgaggaa 287
           |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 441 ttgtttaccaggtaaaacctctgtgataaccatggatgcttgaggaa 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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