BAC Information

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BAC

Clone NameMSMg01-265O22
Chromosome6 (Build37)
Map Location 44,206,596 - 44,206,911
singlet/doubletsinglet
Overlap genenone
Upstream geneArhgef5, Nobox, Tpk1, LOC665747, LOC546897, LOC665779
Downstream geneLOC100040210, Cntnap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265O22.T7 (MSMg01no265_o22.b1)MSMg01-265O22.TJ (MSMg01no265_o22.g1)
ACCAG407054AG407055
length753747
length of high quality
(start - end)		320 (46 - 365)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no265_o22.b1 PHD_FILE: MSMg01no265_o22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:35 2005CHROMAT_FILE: MSMg01no265_o22.g1 PHD_FILE: MSMg01no265_o22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTCAGCTCTGTGCCCCATTTTTAATGGGGTTATTTCAACAA
CTGGTTTTGAGATATTTACAGCACTTGTACTTTGGTCCATATAAGTTTAA
TGTCTTTTTGGACTTAACTTTGACAAAGAATTTATCTAAATAGTTCTAGT
CCTTGAGATTCATCTAGGATTCTTTAAATTTGGTTTCCAAAGTATTTCCT
TTAAATTGTTTTTCATTTTCTAGAGAATTATGTTAGAACTTTTTCACTGA
TTGGTCAGGATTTATGGAAAGTTTTATATCCTTTATGTCATATGCTAAAG
GTTTTCACTGTGTCTATTTTAATAGCCCATCTTTCTCAAGCATATATCTT
TCTAAAAATAGAGAAGGCATGCAAAGAAGCATAGTTTAATTTTTATTGAC
AGGAACTAAGTCATAATATCAAGAACCAAAATCAATAAATATATGAAATA
TCAGGATAATTTATTATTCCTAAGCATAGTGAAACCTTATACTTTATGTC
AATCATGTATCAGATGAGAGAAAGGTCTCCCATGCTCATGGATCAGTAGG
ATATTACAATATAAGTGGCCATCTTATCAAAAGCAATCTACACATTCAAT
GAAATACCCATTGAAATTCCAAAATAATTCTTCATAAAAAGTGAAAGGAT
AATTTTCAGCTTTAGATGGAAACACACACACACACACACACACACACACA
CAC

TCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATAGAGTACATCTGTTTGTATTT
TGTGGAATAGTTTGGGAGAAATGGAATTAGGTCTTCTTTGAAGGTCTGAT
AGAACTCTGCATTAAACCCATCTGGTCCTGGGATTTTATTGGTTGGCAGA
CTATTAATGACAGCTTATATATTTTTTAGGGGTTATGGGACTGTTTAGAT
CATTACTCTGATCCAGATTTAACTTTGGTACCTGGTATCTGTCTAGAAAT
TTGTCCATTTCATCCAGGTTTTCCAGTTTTGTTGAGTATAGCCTTTTGTA
GTAGGATCTGATGATGTTTTGGATTTCCTCACGCTCTATTGTTATGTCTC
CCTTTTCATTTCTAATTTTATCAATTAGGAGACTGTACCTGTGCCTTCTA
GTTAGTCTGACTAAGGGTTTATCTATCTTGTTAATTTTCTCAAAGAATCA
TCTCCTGGTTTGGATGATTGTTTGAATAGTTCTTTTTGTTTCAACTTGGT
TGATTTCAGCCCTGAGTTTAATTATTTCCTGCTGTCTACTCCTGTTGGGT
GAATTAGCTTCCTTTCTTTCTAGTGCTTTTAGATGTGCTGTCAAGCTGCT
ATTGTATGCTCTGTCTAGATTCTTTTTGTCAGCCCTTAGAGCTATGAGTT
TTCCTCTAANGGCTGCTCTCATTGTGTCGCATAAAGTTTGGGTATGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_o22.b1 MSMg01no265_o22.b1 CHROMAT_FILE:
MSMg01no265_o22.b1 PHD_FILE: MSMg01no265_o22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:35 2005
         (320 letters)



>mm_chr6_44206347_44207066
          Length = 720

 Score =  596 bits (308), Expect = e-175
 Identities = 314/316 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttgttcagctctgtgccccatttttaatggggttatttcaacaactggttttg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gaattctttgttcagctctgtgccccatttttaatggggttatttcaacaactggttttg 506

                                                                       
Query: 65  agatatttacagcacttgtactttggtccatataagtttaatgtctttttggacttaact 124
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 505 agatatttacagcacttgtactttggtccatacaagtttaatgtctttttggacttaact 446

                                                                       
Query: 125 ttgacaaagaatttatctaaatagttctagtccttgagattcatctaggattctttaaat 184
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 445 ttgacaaagaatttatctaaatagttctagtcattgagattcatctaggattctttaaat 386

                                                                       
Query: 185 ttggtttccaaagtatttcctttaaattgtttttcattttctagagaattatgttagaac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttggtttccaaagtatttcctttaaattgtttttcattttctagagaattatgttagaac 326

                                                                       
Query: 245 tttttcactgattggtcaggatttatggaaagttttatatcctttatgtcatatgctaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttttcactgattggtcaggatttatggaaagttttatatcctttatgtcatatgctaaa 266

                           
Query: 305 ggttttcactgtgtct 320
           ||||||||||||||||
Sbjct: 265 ggttttcactgtgtct 250


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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