BAC Information

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BAC

Clone NameMSMg01-266E12
Chromosome6 (Build37)
Map Location 40,713,983 - 40,714,291
singlet/doubletsinglet
Overlap geneMgam
Upstream geneMrps33, LOC665247, LOC665254, EG434008, Agk, E330009J07Rik, BC052883, Ssbp1, Tas2r137, Tas2r108, 1700016G05Rik, LOC669661, Olfr461, Olfr460, Clec5a, Tas2r138
Downstream geneEG638904, Moxd2, LOC621968, BC048599, 1700074P13Rik, LOC194360, 1810009J06Rik, LOC100040208, 2210010C04Rik, LOC100039790, Tcrb-V8.2, LOC100040359, LOC100040333, Try4, 1810049H19Rik, Try10, Prss3, EG436523, EG386551, LOC100040233, Prss1, Prss2, Tcrb-V13, Ephb6, Trpv6, Trpv5, 1700034O15Rik, Kel
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-266E12.T7 (MSMg01no266_e12.b1)MSMg01-266E12.TJ (MSMg01no266_e12.g1)
ACCAG407314AG407315
length730756
length of high quality
(start - end)
314 (45 - 358)161 (76 - 236)
definitionCHROMAT_FILE: MSMg01no266_e12.b1 PHD_FILE: MSMg01no266_e12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:01 2005CHROMAT_FILE: MSMg01no266_e12.g1 PHD_FILE: MSMg01no266_e12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGCCATCCCCTACTTACTGATCCTTTTCCCATCATCCCAGAAGAG
CCAGCCCTCAGCACGTCCCTCAGCATTCAACGCAGCCCTGAGGCCCATGA
ACTTCTGCCGGCTGTGGTGGGAAGGGAGAGAAGCATTAGCTTAGAGTTCA
GTCACAGTCACAAGCCAACAGATTTCACAGGAACAAAGGAGCAAAATGAA
GTTCTTCCTGGGGTGGAGAGTGGGTTCTCATCTGAGAAGACCCTGAACAG
CAGTTCTACATCCATGCAGATATAACGGGACCACTGCATGTCCTAAATGA
ATAATGTCTTTTTTTTTCCACCCCCCCCCTCCAGTAAGGCTCTCAAATTA
AAACCACATAGCTGCCCCTCTTCTTTCCCCTTTCCTGAGGCTGTAAACCT
CTTTCATGACCCATTGCCTAAAACACATGGAGGACAAATGGGTGACGTTT
TGAGGTGAGATATCAGGTCCACTGTATTCCAGTGAGCAATTTCCATCCTT
TTCCATCACATAGGCTAGTAACACCTCCCTGTCATCATCCACAGAATGAA
GATGATAGTGATACTCCACTCCAACAATTTTCTCATTGGTAACAGACTAA
TTGGACACCATATGACATAATTCTTACTACTGGCATAGTCCAGGGATGCA
GCAAGAATTTACTTGAGGCTGGCGACTGAG
TCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTTGTGTGTGTGTGTCTCTGTGTG
TGTGTGTGTGTGTGTCTGTGTGTGTGAGCATGTATGTGCATGTGTTTGTG
TGTATGCATTGTATGTACATGCCTGAGTGGATGTATGTACATGTGTGTGA
AGATGTGTTTACATTCATGTGTGAGGGGACCAGAGACTGACACTGGTGCC
TTCTTCAATCTTTGTCCATCTCATGTATTAAGGCAGGATCTCTTTATGAA
ACTGGAGTTCATTAATTCAATTATTTTTTACTGCCCAACGAGTACCAGGG
ATTCTCCCATTGCAGTCACTTCATAAACGGNTCCCTGTTATATTATTATA
TGGGTTAGACTTGACCCCCACCCGAAAAAAAAAAATATATGCTCGGGTCC
TCATTCAAGTATTCTCTTTACCTGGTGACCCATCTTCAAATGCTAGAATT
ATGTGCCTTTTCTATTTTCCATACAGTATTTCTCTAGTGTACCCTGTGCC
GCCCTGCACCTTCCTTTGCAGACCATGCTGTGTTTCTTGATCTCATGTCT
TTTTTGTTTCTGCCCTCCCGAGTGTTCCTAATTAATGGTCTGCATCCACC
ATTTCTTAGAGAAAAATCACCTCTTTTTTATCAATCGTGTGTATCAAACT
CCGCAGATTTTTTCTTACCCTTCACCCCCCTTGCAGTTCCTTTTTATTTT
TTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no266_e12.b1 MSMg01no266_e12.b1 CHROMAT_FILE:
MSMg01no266_e12.b1 PHD_FILE: MSMg01no266_e12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:04:01 2005
         (314 letters)



>mm_chr6_40713778_40714491
          Length = 714

 Score =  567 bits (293), Expect = e-166
 Identities = 305/309 (98%)
 Strand = Plus / Minus

                                                                       
Query: 6   aattccagccatcccctacttactgatccttttcccatcatcccagaagagccagccctc 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 aattccagccatcccctacttactgatccttttcccatcatcccagaagagccagccctc 455

                                                                       
Query: 66  agcacgtccctcagcattcaacgcagccctgaggcccatgaacttctgccggctgtggtg 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 agcacgtccctcagcattcaacgcagccctgaggcccatgaacttctgccggctgtggtg 395

                                                                       
Query: 126 ggaagggagagaagcattagcttagagttcagtcacagtcacaagccaacagatttcaca 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ggaagggagagaagcattagcttagagttcagtcacagtcacaagccaacagatttcaca 335

                                                                       
Query: 186 ggaacaaaggagcaaaatgaagttcttcctggggtggagagtgggttctcatctgagaag 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ggaacaaaggagcaaaatgaagttcttcctggggtggagagtgggttctcatctgagaag 275

                                                                       
Query: 246 accctgaacagcagttctacatccatgcagatataacgggaccactgcatgtcctaaatg 305
           |||||| |||||||||||||||||||||||| || || ||||||||||||||||||||||
Sbjct: 274 accctgtacagcagttctacatccatgcagaaattactggaccactgcatgtcctaaatg 215

                    
Query: 306 aataatgtc 314
           |||||||||
Sbjct: 214 aataatgtc 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)